Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40813
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.2  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   9.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 304 EKTRLTLEQQTAEVYKAIEDK 366
           E  +LTL Q+TA+ +K ++DK
Sbjct: 385 ETNQLTL-QETADAFKDLQDK 404


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +1

Query: 340 EVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRAGNQEK 474
           E+ K+ +D     ADK ++ +   + R+      V   + GN+++
Sbjct: 60  EIEKSEDDSFNNQADKSEKRIPLYVCRVLHTTVWVAGAQRGNEQR 104


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 31  LTRKDSFRRRDPREAEGSRRE 93
           L   +SFR+R  REA G+ R+
Sbjct: 433 LAGDESFRKRRQREAAGNCRK 453


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = +1

Query: 349 KAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKR 510
           K  +D      DK DE L   ++ + +    V      N+EKF++  + +  ++
Sbjct: 42  KKADDVKKGIFDKNDEKLACYVDCMLKKVGFVNADTTFNEEKFRERTTKLDSEQ 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,535
Number of Sequences: 438
Number of extensions: 2508
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)