Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40808
         (635 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC057394-1|AAH57394.1| 1562|Homo sapiens Rho guanine nucleotide ...    30   7.9  
AL356104-3|CAH72939.1| 1562|Homo sapiens Rho guanine nucleotide ...    30   7.9  
AL356104-2|CAH72940.1| 1522|Homo sapiens Rho guanine nucleotide ...    30   7.9  
AL157713-2|CAH70128.1| 1562|Homo sapiens Rho guanine nucleotide ...    30   7.9  
AL157713-1|CAH70127.1| 1522|Homo sapiens Rho guanine nucleotide ...    30   7.9  
AB002378-1|BAA20834.2| 1539|Homo sapiens KIAA0380 protein protein.     30   7.9  

>BC057394-1|AAH57394.1| 1562|Homo sapiens Rho guanine nucleotide
            exchange factor (GEF) 11 protein.
          Length = 1562

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 240  VPCGTAAHDRTQWRNVTCGRDPQQ*GNDIEEERKGLGPKPYSSFWG 377
            +P GT +  R Q ++     DP+Q G+  EEE  G+ P P +S  G
Sbjct: 1169 LPGGTGSQQRVQGKHQVLLEDPEQEGS-AEEEELGVLPCPSTSLDG 1213


>AL356104-3|CAH72939.1| 1562|Homo sapiens Rho guanine nucleotide
            exchange factor (GEF) 11 protein.
          Length = 1562

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 240  VPCGTAAHDRTQWRNVTCGRDPQQ*GNDIEEERKGLGPKPYSSFWG 377
            +P GT +  R Q ++     DP+Q G+  EEE  G+ P P +S  G
Sbjct: 1169 LPGGTGSQQRVQGKHQVLLEDPEQEGS-AEEEELGVLPCPSTSLDG 1213


>AL356104-2|CAH72940.1| 1522|Homo sapiens Rho guanine nucleotide
            exchange factor (GEF) 11 protein.
          Length = 1522

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 240  VPCGTAAHDRTQWRNVTCGRDPQQ*GNDIEEERKGLGPKPYSSFWG 377
            +P GT +  R Q ++     DP+Q G+  EEE  G+ P P +S  G
Sbjct: 1129 LPGGTGSQQRVQGKHQVLLEDPEQEGS-AEEEELGVLPCPSTSLDG 1173


>AL157713-2|CAH70128.1| 1562|Homo sapiens Rho guanine nucleotide
            exchange factor (GEF) 11 protein.
          Length = 1562

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 240  VPCGTAAHDRTQWRNVTCGRDPQQ*GNDIEEERKGLGPKPYSSFWG 377
            +P GT +  R Q ++     DP+Q G+  EEE  G+ P P +S  G
Sbjct: 1169 LPGGTGSQQRVQGKHQVLLEDPEQEGS-AEEEELGVLPCPSTSLDG 1213


>AL157713-1|CAH70127.1| 1522|Homo sapiens Rho guanine nucleotide
            exchange factor (GEF) 11 protein.
          Length = 1522

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 240  VPCGTAAHDRTQWRNVTCGRDPQQ*GNDIEEERKGLGPKPYSSFWG 377
            +P GT +  R Q ++     DP+Q G+  EEE  G+ P P +S  G
Sbjct: 1129 LPGGTGSQQRVQGKHQVLLEDPEQEGS-AEEEELGVLPCPSTSLDG 1173


>AB002378-1|BAA20834.2| 1539|Homo sapiens KIAA0380 protein protein.
          Length = 1539

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 240  VPCGTAAHDRTQWRNVTCGRDPQQ*GNDIEEERKGLGPKPYSSFWG 377
            +P GT +  R Q ++     DP+Q G+  EEE  G+ P P +S  G
Sbjct: 1146 LPGGTGSQQRVQGKHQVLLEDPEQEGS-AEEEELGVLPCPSTSLDG 1190


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,022,349
Number of Sequences: 237096
Number of extensions: 1824119
Number of successful extensions: 3355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3355
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)