Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40807
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    55   5e-10
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.1  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 55.2 bits (127), Expect = 5e-10
 Identities = 21/34 (61%), Positives = 29/34 (85%)
 Frame = +1

Query: 238 SVDLHSVGAVMFVIAFLGCCGAIRESHCMVVTYA 339
           S+ L  +G+++FVI+F GCCGAIRESHCM +T+A
Sbjct: 52  SITLIVLGSIIFVISFFGCCGAIRESHCMTITFA 85



 Score = 25.8 bits (54), Expect = 0.38
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 501 IATQFECCGNTGAINYGQFTLPESCC 578
           I    +CCG     +Y    +P SCC
Sbjct: 139 IQKNLQCCGVHSLSDYNDKPIPASCC 164


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 558 TLPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGEL 668
           T  ESC V   I + + G N  +  A    G KI EL
Sbjct: 252 TFFESCGVADLIATCYGGRNRKICEAFVKTGKKISEL 288


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 342  LFAGDHHCASGDQRPPLHLRREHQGEHYGWRRR 440
            L+       + DQ+P  +L  +   + YG RR+
Sbjct: 963  LYKSSESSCNPDQKPTEYLLEDSMKQQYGKRRK 995


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 21/80 (26%), Positives = 33/80 (41%)
 Frame = -3

Query: 486 LGGLVCVSVRSLFE*HADAIHNALLDALAVGEEEDADHHLHNDDHQQKDCVRDDHAVTLA 307
           L GL  ++ R LF      +H+A  D + VGE+  A   L     + K  + + +    A
Sbjct: 397 LNGLEGLTGRGLFISDIP-LHDATRDVILVGEQARAQDGLRRRMDKLKSSIEEANLAVSA 455

Query: 306 YRSTASQERDHEHYSPDAMK 247
            R   +    H  + PD  K
Sbjct: 456 ERE-KNVSLLHLIFPPDIAK 474


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
 Frame = -3

Query: 375 HHLHNDDHQ-QKDCVRDDH---AVTLAYRSTASQERDHEHYSPDAMKI 244
           HHL N  H  Q   V+D H         +    Q ++     PD +K+
Sbjct: 142 HHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRLRPDEIKV 189


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 122 IAHISQNSFHIPC*EHYFLFLFHN 51
           I + S +SF+IPC     +FL++N
Sbjct: 344 IIYSSLSSFYIPC--IIMVFLYYN 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,922
Number of Sequences: 438
Number of extensions: 3486
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)