Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40805
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    26   0.26 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.9  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 340 WVAWLCMLAGAIAVIVRAPKCGPPEPRTWY-ELGPLVGLELVD 465
           WV   C     I VI++ P CGP     ++ +L PL  L   D
Sbjct: 9   WVGGFCHSIIQIPVIIQLPFCGPNVIDHYFRDLQPLFKLACTD 51


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
 Frame = -2

Query: 378 CNSPGEHAQPG-------HPEQHEQRPTQVHPER 298
           C+SPG +           HP QH   P+Q HP R
Sbjct: 299 CHSPGVYPSTAGFLPPSYHPHQHH--PSQYHPHR 330


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 192 MSSGTTGMVTRRLNSMLINGNHWDDERGGTE 284
           M++GTT + TRRL     N     D+R   E
Sbjct: 254 MTTGTTTIPTRRLRKRRQNDGEGADDRDDDE 284


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 271 EEVLKYADDPFWVNLRWSLFVLF-WVAWLCMLAGAIAVIVRAP 396
           E+  K  +D  W  +   L  LF W+  L +L G   +I++AP
Sbjct: 502 EDSTKVKED--WKYVAMVLDRLFLWIFTLAVLVGTAGIILQAP 542


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 271 EEVLKYADDPFWVNLRWSLFVLF-WVAWLCMLAGAIAVIVRAP 396
           E+  K  +D  W  +   L  LF W+  L +L G   +I++AP
Sbjct: 502 EDSTKVKED--WKYVAMVLDRLFLWIFTLAVLVGTAGIILQAP 542


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -2

Query: 225 FASPFLWSPTTYFASDMSTRV 163
           F    +W+PT Y +++ S+ +
Sbjct: 92  FVRDLIWTPTVYVSNEPSSAI 112


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 246 LLASSSIFASPFLWSPTTYFASDMST 169
           +L  S  FA   +W P T+FA+D ++
Sbjct: 105 VLTLSGDFAEK-IWVPDTFFANDKNS 129


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 411  GRAALGSAYNDCNSPGEHAQPGHPEQHEQ 325
            GR ++GSA N   S      P  P  H+Q
Sbjct: 1841 GRRSVGSARNIPVSGSPEPPPPPPRNHDQ 1869


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 331 VLFWVAWLCMLAGAIAVIVRAP 396
           +  WV  L   AG + +I +AP
Sbjct: 484 LFLWVFTLACTAGTLGIIFQAP 505


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +1

Query: 331 VLFWVAWLCMLAGAIAVIVRAP 396
           +  W+  L ++ G   +I++AP
Sbjct: 516 LFLWIFTLAVVVGTAGIILQAP 537


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,778
Number of Sequences: 438
Number of extensions: 3419
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)