Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40803
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.6  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 627 SCGNGASTVSTPSRDSEDL 571
           SCG G + ++TP  DS+ +
Sbjct: 369 SCGGGPTILTTPGLDSDGI 387


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 621 HNSPSRTGTFLSRSTERSHHSP 686
           HNSPS TG+    S   +  SP
Sbjct: 59  HNSPSPTGSSPQHSGSSASTSP 80


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 128 LLRPLSAIFHVICRVEIVETKQTLKRSRVNTFT 30
           L  PL+ I H  C   I  T+   + +R N F+
Sbjct: 287 LEEPLTTIQHNNCLTRIPSTRINKQHTRGNNFS 319


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 467 FVVDSLNNDLF 435
           F+VD L NDLF
Sbjct: 96  FIVDRLRNDLF 106


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +3

Query: 570 LSLRCPGTVCLPWKRHCHNSPSRTGTFLSRSTERSHHSP 686
           L +R P    L W     N    T T+    TE   H P
Sbjct: 346 LMMRRPKKTRLRWMMEIPNVTLPTSTYSGSPTELPKHLP 384


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 72  N*TNTETFSRKHFHWNNTH 16
           N  NTE F +  +  NN H
Sbjct: 274 NYVNTEQFVKSQYQANNVH 292


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 540 KNSLLYSLYTDSYQIS 493
           KN+L+Y +Y  S+Q S
Sbjct: 28  KNALVYQIYPRSFQDS 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,717
Number of Sequences: 438
Number of extensions: 3632
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)