Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40802
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy...    27   2.7  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   2.7  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    27   3.6  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   6.3  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   8.3  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    25   8.3  

>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 152

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -2

Query: 387 HKLELGEHFELQSNNNFVDGQYNERLI*KPVAFSKIRRVHDSGPIYNRQKYHDDLK 220
           H L++  HF L S +     Q     I KP+     +R+ DS  I + Q+  D LK
Sbjct: 40  HILKVQRHFNLISEDELSARQAKFEEIVKPILSKAFQRLEDS--ISSLQRQEDSLK 93


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 170 PTNRILFNELNIKNHRKFQLLDTVSEL 90
           P  R    ++ ++NHR+F++ D VSEL
Sbjct: 918 PKLRDSMEQVPLENHREFEISDRVSEL 944


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 621 SMNLSVSSLYLATAARASNVFGSHEAKSDKDFLSNIILLCPS 496
           + ++S       T++  S  F +HEA S+KD  S+  L+ PS
Sbjct: 46  AFSISAQDQIYGTSSLKSR-FSTHEASSEKDDSSDFTLVLPS 86


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 523  IQHYIALSKPSLKENSVILCCSQ 455
            +Q+ IA+ KP++   +V  CCS+
Sbjct: 1085 LQYTIAVCKPTIAPTNVACCCSK 1107


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +3

Query: 210 KFRFLDRHGIFVCYK---WARCRG 272
           KFR L ++G+ +CYK   W  C G
Sbjct: 496 KFRELVKNGVPLCYKAKVWLECSG 519


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 65  HYQIIDKNKSKYHRPFFWYNF 3
           HYQI D  KSK +    W N+
Sbjct: 286 HYQIPDNPKSKAYEDHSWANY 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,584
Number of Sequences: 5004
Number of extensions: 61346
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)