Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40802
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0612 + 30602862-30603410                                         56   3e-08
03_06_0465 - 34130083-34130340,34130421-34130541,34131158-341311...    32   0.53 
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329...    29   2.8  
07_01_0891 - 7447079-7447330,7447431-7447554,7449571-7449793,744...    29   3.8  
04_03_0150 + 11877714-11878487,11880928-11881245                       29   3.8  
08_02_1188 + 25053594-25054941,25055025-25055650                       28   6.6  
05_04_0031 + 17353292-17354353                                         28   8.7  

>01_06_0612 + 30602862-30603410
          Length = 182

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 26/63 (41%), Positives = 37/63 (58%)
 Frame = +3

Query: 291 KRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLWDVRITAACEQHN 470
           K ++F+LA  + GR +NC  IA   V +AL Y+ + R  KK DM+SLW  RI A    H 
Sbjct: 3   KGKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRHNKKRDMRSLWIERINAGTRLHG 62

Query: 471 ITL 479
           + +
Sbjct: 63  VCI 65


>03_06_0465 -
           34130083-34130340,34130421-34130541,34131158-34131186,
           34132259-34132382,34132594-34132816,34132948-34132980,
           34133106-34133208
          Length = 296

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 459 EQHNITLFSLREGLDRAI*CWIG-NLCQTWLHGNQKHLKPS 578
           E+HN T      GL  A   WIG ++C+ W HG    + P+
Sbjct: 233 EEHNETFCGTCGGLYNANEFWIGCDICERWFHGKCVRITPA 273


>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
            3299528-3299531,3299814-3299949,3300034-3300090,
            3301689-3301786,3301876-3301947,3302056-3302228,
            3302552-3302698,3303113-3303336,3305300-3305306,
            3305634-3305800,3306033-3306068,3306787-3307004,
            3307115-3307172,3307761-3307842,3308045-3308207,
            3308594-3308598,3308700-3308885,3308969-3309548,
            3309642-3309774,3309880-3309948,3310184-3310395,
            3310654-3310891,3311228-3311386,3311501-3311926,
            3312010-3312447,3312593-3312712,3312784-3313266,
            3313471-3314009,3314178-3314667,3314836-3314904,
            3315735-3315839,3315940-3316158,3316254-3316508,
            3316602-3316651,3317175-3317284,3317372-3317454,
            3317560-3317772,3317870-3318040
          Length = 2391

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 338  SSTANIMSG*SKNPSLSPKFVGSTT-AGPFITDKNTMTI*KSEFRLESQN*PYM*EEPTN 162
            SS  N+++     P + PK +G+T   G    D N++T+   E ++ S + PY+    T 
Sbjct: 1002 SSVMNLLAEIYSQPEMVPKMLGTTAIGGDNEFDLNSVTLVAGEEKMGSNDNPYVLAALTP 1061

Query: 161  RI 156
            R+
Sbjct: 1062 RL 1063


>07_01_0891 -
           7447079-7447330,7447431-7447554,7449571-7449793,
           7449891-7449923,7450042-7450144
          Length = 244

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 459 EQHNITLFSLREGLDRAI*CWIG-NLCQTWLHGNQKHLKPS 578
           E+H+ TL     G   A   WIG ++C+ W HG    + P+
Sbjct: 183 EEHSETLCGTCGGRYNANEFWIGCDICERWFHGKCVRITPA 223


>04_03_0150 + 11877714-11878487,11880928-11881245
          Length = 363

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 285 WRKRRVFRLAAHYIGRRRNCYSIAVRNVHR--ALVYATKARKLKKEDMKSLWDVR 443
           WR+R  +RL AH +G R N     V +     A+ ++    +  +E +++ W  R
Sbjct: 219 WRRRASWRLGAHGVGLRVNAAGFVVEDASTVVAVDFSDPTARSSEEPVEAPWRSR 273


>08_02_1188 + 25053594-25054941,25055025-25055650
          Length = 657

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 270 GPDEFWRKRRVFRLAAHYIGRRRN 341
           G D  WR+RR F   A  IGR R+
Sbjct: 393 GSDSGWRRRRAFETEAAAIGRARH 416


>05_04_0031 + 17353292-17354353
          Length = 353

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 646 CGVTFIWSIYESVCFKFVFSYSSEG 572
           CG T  W +Y + C +  + Y  +G
Sbjct: 304 CGCTEAWDLYAAFCLRSFYGYHDDG 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,084
Number of Sequences: 37544
Number of extensions: 350550
Number of successful extensions: 644
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)