Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40802
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117203-7|CAB55109.1|  191|Caenorhabditis elegans Hypothetical ...    39   0.003
Z30423-3|CAA83005.2|  456|Caenorhabditis elegans Hypothetical pr...    35   0.068
Z81057-1|CAB02914.2|  460|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF022971-3|AAG23977.1|  474|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z92837-4|CAH10846.1|  193|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>AL117203-7|CAB55109.1|  191|Caenorhabditis elegans Hypothetical
           protein Y48C3A.10 protein.
          Length = 191

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = +2

Query: 485 FKRRLGQSNIMLDRKSLSDLASWEPKTFEALAAVAK 592
           FK  L QS+I+LD   LS LA +EP++F +L A AK
Sbjct: 97  FKSILSQSHILLDNICLSQLAIYEPRSFRSLVAFAK 132


>Z30423-3|CAA83005.2|  456|Caenorhabditis elegans Hypothetical
           protein T20G5.4 protein.
          Length = 456

 Score = 34.7 bits (76), Expect = 0.068
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -3

Query: 173 EPTNRILFNELNIKNHRKFQLLDTVSEL*INWVGEH-HYQIIDKNKSKYHRPFFW 12
           E T  ++F +L++K  ++F  LDTV+        E  ++ +I  N +KY  PF W
Sbjct: 133 ELTQVLIFRDLSMKARKRFPTLDTVAAAGFMMPHEKANFDLIQYNYNKYFLPFNW 187


>Z81057-1|CAB02914.2|  460|Caenorhabditis elegans Hypothetical
           protein F10D11.2 protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
 Frame = -3

Query: 305 KNPSLSPKFV---GSTTAGPFITD--KNTMTI*KSEFRLESQN*PYM*EEPTNRILFNEL 141
           +N S+SP+ +   G++ AG  + D  KNTMT+ K++ ++  +      +E    + +N+ 
Sbjct: 190 RNRSISPEKMDTTGNSGAGMSVRDFLKNTMTVQKADEKILEEELERERDEAAQTVRYNKF 249

Query: 140 NIKNHRK 120
            ++N  K
Sbjct: 250 RVRNRPK 256


>AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical
           protein T06A1.5 protein.
          Length = 476

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = -2

Query: 393 WLHKLELGEHFELQSNNNFV-----DGQYNERLI*KPVAFSKI 280
           WLH  EL EH++LQ  N F       G+Y+ +L+   VA  ++
Sbjct: 226 WLHFAELVEHYKLQGVNKFFIYIREIGEYDMKLVKSYVASGEV 268


>AF022971-3|AAG23977.1|  474|Caenorhabditis elegans Hypothetical
           protein C31B8.7 protein.
          Length = 474

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 393 WLHKLELGEHFELQSNNNF 337
           WLH +EL EH++LQ  N F
Sbjct: 224 WLHFVELVEHYKLQGVNKF 242


>Z92837-4|CAH10846.1|  193|Caenorhabditis elegans Hypothetical
           protein R03E1.4 protein.
          Length = 193

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +2

Query: 554 EPKTFEALAAVAKYKLETDRFIDG-PDKCHPTGINLNLKDVMLEAWLN 694
           EP + E +++ A+Y+LE  + +   P+  +  G + N K V+LEA++N
Sbjct: 88  EPPSSEIVSSQAQYRLENMKLLSNVPETFNVAGPS-NSKMVLLEAYMN 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,448,190
Number of Sequences: 27780
Number of extensions: 333892
Number of successful extensions: 692
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)