Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40752
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces...    29   0.42 
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        29   0.56 
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    27   1.7  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   2.3  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    27   2.3  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    27   2.3  
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc...    26   3.9  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    26   5.2  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    26   5.2  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   9.1  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    25   9.1  

>SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
 Frame = +3

Query: 249 GCEEMETVITVDMLRRGGVTV--TLAGLEGSSPVLCSRQVTLVPDKSLTEALAEK---QQ 413
           G +E+E      + +R  + +     G      V  SR V +  ++S  E  +     +Q
Sbjct: 11  GTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQ 70

Query: 414 YDAVILPGGLEGSDSLSKSEKVGALLKDHEDK 509
           YD  I+PGG  G+ +LS +  V  ++K+   K
Sbjct: 71  YDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKK 102


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 587 TSRAGPSPRRGLQTLWEQHKWQQ*FSLILVVFKQ 486
           T+ +G SP   L  LW+ H W      IL+  KQ
Sbjct: 41  TANSGMSPTHKLPALWDGHVWIGSLKNILIYLKQ 74


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/64 (23%), Positives = 24/64 (37%)
 Frame = -1

Query: 535 STNGSNDFPLSSWSLSRAPTFSDLERLSDPSKPPGRITASYCCFSARASVSDLSGTRVTC 356
           + N   +   SSWSLS + +    + LSD       +      F    S++  S +    
Sbjct: 58  TNNAHEEVSSSSWSLSSSDSIMSYDSLSDDVSVLSFLDCPLTTFETAPSIASFSNSAADV 117

Query: 355 LEHS 344
             HS
Sbjct: 118 SSHS 121


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 427 ITASYC-CFSARASVSDLSGTRVTCLEHSTGDEPSKPARVTV 305
           +  ++C  F+  AS+ + +GT+  CL H     P+  + +TV
Sbjct: 714 MACAFCKTFAYLASIEEKNGTKTACLSHKDECFPNTDSDLTV 755


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -1

Query: 583 HAPAPRHAVGCKRYGSSTNGSNDFPLSSWSLSRAPTFSDLERLSDPSKPPGRITASY 413
           +AP+ +  V      S+ +G  +  L SW+  RA   +  + L  PSKP  R+ ASY
Sbjct: 376 NAPSKQGKVYVAGITSNQHGIGE-TLLSWAAIRAGGLA--KELFGPSKPTARVPASY 429


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 574 APRHAVGCKRYGSSTNGSNDFPLSSWSLSRAPT 476
           AP+  V  +   S T  SN  PL SWS    PT
Sbjct: 85  APQSTVFGQNAASRTGNSNTQPLFSWSTVNNPT 117


>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
           kinase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 351 SRQVTLVPDKSLTEALAEKQQYDAVILPGGLEGSD 455
           +R++ L+  +S T  L++K  Y+A  LPG  EG D
Sbjct: 307 ARELRLI--QSRTALLSKKSIYEAEFLPGFEEGED 339


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 369 VPDKSLTEALAEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHED 506
           VPD+ + EAL    +   V     L G+D ++   KV +L  D ED
Sbjct: 80  VPDR-VPEALVSTSKKHLVAARDALRGNDDIALLHKVPSLDTDPED 124


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 441 LEGSDSLSKSEKVGALLKDHEDKGKSL 521
           L GS+ LS S+ VG  LK+ +   KSL
Sbjct: 712 LAGSERLSSSQSVGERLKETQAINKSL 738


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = -1

Query: 541 GSSTNGSNDFPLSSWSLSRAPTFSDLERLSDPSKPPGRITASYCCFSARASVSDLSGTRV 362
           G ++NG  +  ++  S  R+ + S+ ER  D S+     T+         SV     T  
Sbjct: 234 GLNSNGVENSSITK-SSPRSSSSSNNERFKDTSEESIIFTSPNT--PEHPSVYQTDITPE 290

Query: 361 TCLEHSTGDEPSKP 320
             LEHS  + PSKP
Sbjct: 291 IKLEHSDNNSPSKP 304


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 210 LNNEQVCVSDFGAGCEEMETVIT 278
           L++  V V DFG+ C E +TV T
Sbjct: 268 LSSPIVKVIDFGSACHERQTVYT 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,554
Number of Sequences: 5004
Number of extensions: 40507
Number of successful extensions: 101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)