Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40751
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 143 1e-34
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 142 2e-34
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 142 2e-34
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.87
04_04_0040 + 22322839-22324173 31 1.2
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 30 2.0
12_02_0656 + 21601782-21601925,21602249-21602460,21602686-216028... 25 2.5
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.5
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169 29 4.7
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 4.7
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 28 6.2
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 6.2
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 143 bits (346), Expect = 1e-34
Identities = 64/86 (74%), Positives = 73/86 (84%)
Frame = +2
Query: 2 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 181
LKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR
Sbjct: 25 LKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQR 84
Query: 182 LIKVDGKVRTDPTYPAGFMDVVSIGR 259
+ VDGKVRTD TYPAGFMDVVSI +
Sbjct: 85 HVMVDGKVRTDKTYPAGFMDVVSIAK 110
Score = 125 bits (301), Expect = 4e-29
Identities = 55/88 (62%), Positives = 69/88 (78%)
Frame = +1
Query: 256 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 435
KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+DGRTIRYPDPL
Sbjct: 110 KTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPL 169
Query: 436 IKVNDSIQLDIATTKIMDFIKFESGTCV 519
IK ND+I++D+ T KI+DFIKF+ G V
Sbjct: 170 IKANDTIKIDLETNKIVDFIKFDVGNIV 197
Score = 84.6 bits (200), Expect = 7e-17
Identities = 36/62 (58%), Positives = 47/62 (75%)
Frame = +3
Query: 504 VWNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVVIIGKGTKAYI 683
V N+ M+TGGRN GRVG I SRE+H GSF+ +H++D+ GH FATR+ NV IGK K ++
Sbjct: 193 VGNIVMVTGGRNTGRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWV 252
Query: 684 SL 689
SL
Sbjct: 253 SL 254
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 142 bits (344), Expect = 2e-34
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +2
Query: 2 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 181
LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR
Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQR 68
Query: 182 LIKVDGKVRTDPTYPAGFMDVVSI 253
+ VDGKVRTD TYPAGFMDV+SI
Sbjct: 69 HVLVDGKVRTDKTYPAGFMDVISI 92
Score = 121 bits (292), Expect = 5e-28
Identities = 52/88 (59%), Positives = 68/88 (77%)
Frame = +1
Query: 256 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 435
KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYPDP+
Sbjct: 94 KTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPI 153
Query: 436 IKVNDSIQLDIATTKIMDFIKFESGTCV 519
IK ND+I++D+ T KI+DFIKF+ G V
Sbjct: 154 IKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 87.4 bits (207), Expect = 1e-17
Identities = 37/62 (59%), Positives = 48/62 (77%)
Frame = +3
Query: 504 VWNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVVIIGKGTKAYI 683
V N+ M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NV IGKG K ++
Sbjct: 177 VGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWV 236
Query: 684 SL 689
SL
Sbjct: 237 SL 238
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 142 bits (344), Expect = 2e-34
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +2
Query: 2 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 181
LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR
Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQR 68
Query: 182 LIKVDGKVRTDPTYPAGFMDVVSI 253
+ VDGKVRTD TYPAGFMDV+SI
Sbjct: 69 HVLVDGKVRTDKTYPAGFMDVISI 92
Score = 122 bits (294), Expect = 3e-28
Identities = 53/88 (60%), Positives = 68/88 (77%)
Frame = +1
Query: 256 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 435
KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYPDPL
Sbjct: 94 KTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPL 153
Query: 436 IKVNDSIQLDIATTKIMDFIKFESGTCV 519
IK ND+I++D+ T KI+DFIKF+ G V
Sbjct: 154 IKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 87.8 bits (208), Expect = 7e-18
Identities = 37/62 (59%), Positives = 48/62 (77%)
Frame = +3
Query: 504 VWNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVVIIGKGTKAYI 683
V N+ M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NV IGKG K ++
Sbjct: 177 VGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGNKPWV 236
Query: 684 SL 689
SL
Sbjct: 237 SL 238
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 122 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 21
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>04_04_0040 + 22322839-22324173
Length = 444
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 575 TSRL--LR-HCAHQGLHGAHLRHEVEQRGHNRQGHEGVHLVAR 694
TSRL LR H H HG + RH++ +R R H LVAR
Sbjct: 25 TSRLKGLRVHLTHVDAHGNYSRHQLLRRAARRSHHRMSRLVAR 67
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 539 LGACGHHRVPRETSRLLRHCAHQGLHGAHLRHEVEQRGHNRQGHEGVHL 685
+G+ R R R H H H AH RH+ E GH R H +H+
Sbjct: 680 VGSEAQERARRRHKRAHSH-RHSHHHDAHKRHKTELAGHRR--HHVLHI 725
>12_02_0656 +
21601782-21601925,21602249-21602460,21602686-21602813,
21602905-21602986,21603308-21603406,21603619-21604054,
21604280-21604350,21604438-21604523,21604740-21604750
Length = 422
Score = 24.6 bits (51), Expect(2) = 2.5
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = -2
Query: 626 GVPRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPDSNLMKSIIFVVAMSNWMES 447
GV + VL+VH G+ ++ GAH Q A Q ++ I+FV + +
Sbjct: 105 GVMKAVLNVHITNGSETAVIALWGAHDTQFHAENLQQQADHGPVV--ILFVGLTVKFRDH 162
Query: 446 LTLISGS 426
+ GS
Sbjct: 163 QLALQGS 169
Score = 23.4 bits (48), Expect(2) = 2.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 347 HNLYLASSGVIRWIVNLPLTS*IRRNSSLV 258
H L L S V RW N P+ I SS +
Sbjct: 162 HQLALQGSTVCRWYPNAPIQETISLISSAI 191
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 135 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 7
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
Length = 627
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -2
Query: 650 HVVQPRGEGVPRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPDSNLMKSIIFVV 471
H+V P G G+P G+ ++ ++ G + H + + R+ T + D NL S VV
Sbjct: 428 HLVIPEGTGLPDGIGNLKSLITLRSFDLGENSLH--NIRSIRELTNLKDLNLCYSGKNVV 485
Query: 470 A-MSNWMESL 444
+ M W++ L
Sbjct: 486 SNMETWIDVL 495
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 19 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 183
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +1
Query: 553 APSCPARDI--PAPSTLCTSRTPRGTPSP 633
AP P+ D PAP T T +P TPSP
Sbjct: 70 APDAPSGDFFPPAPPTTTTPTSPGTTPSP 98
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 271 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 375
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,117,442
Number of Sequences: 37544
Number of extensions: 516799
Number of successful extensions: 1722
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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