Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40751
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   125   3e-29
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    33   0.19 
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.5  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    27   9.7  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    27   9.7  
AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    27   9.7  
AF025464-1|AAN84805.1|  529|Caenorhabditis elegans Prion-like-(q...    27   9.7  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  125 bits (301), Expect = 3e-29
 Identities = 60/91 (65%), Positives = 69/91 (75%)
 Frame = +2

Query: 2   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 181
           LKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ QR
Sbjct: 8   LKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQR 67

Query: 182 LIKVDGKVRTDPTYPAGFMDVVSIGRLMNCF 274
           +++VDGKVRT   +P GFMDVV+I R    F
Sbjct: 68  VVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98



 Score =  115 bits (276), Expect = 4e-26
 Identities = 52/85 (61%), Positives = 63/85 (74%)
 Frame = +1

Query: 256 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 435
           +TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRTIRYPDP 
Sbjct: 93  RTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPH 152

Query: 436 IKVNDSIQLDIATTKIMDFIKFESG 510
           +KVND+I  +I+T KI D +KFE G
Sbjct: 153 VKVNDTIVFNISTQKITDSVKFEPG 177



 Score = 90.6 bits (215), Expect = 9e-19
 Identities = 40/60 (66%), Positives = 49/60 (81%)
 Frame = +3

Query: 510 NLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVVIIGKGTKAYISL 689
           NL  +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NV +IGKG KA +SL
Sbjct: 178 NLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSL 237


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 593 HCAHQGLHGAHLRHEVEQRG-HNRQGHEGVH 682
           H AH   HG H RH  E  G H+   H G H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH 422



 Score = 32.7 bits (71), Expect = 0.26
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +2

Query: 551 GHHRVPRETSRLLRHCAHQGLHGAHLRHEVEQRGHNRQGHEGVH 682
           G H  P        H  H   HGAH  H  ++  H+  GH   H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721



 Score = 32.3 bits (70), Expect = 0.34
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
 Frame = +2

Query: 524 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGAH--LRHEVEQRGHNRQGHE-GVH 682
           HG    G+ G H     T   L H  H G HG H    H     GH+   HE G H
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAH 698



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +2

Query: 545 ACGHHRVPRETSRLLRHCAHQGLHGAHLRHEVEQRGHNRQGHEGVH 682
           A  HH    E      H  H G HG H  H          GH G H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEH 509



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +2

Query: 554 HHRVPRETSRLLRHCAHQGLHGAHLRHEVEQRGHNRQGHEGVH 682
           HH  P        H  H G HG H  H     GH+  G  G H
Sbjct: 509 HHHAPAHHGHHGEHGTHHGHHGEH-HHAPAHHGHH--GEHGTH 548



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 554 HHRVPRETSRLLRHCAHQGLHGAHLRHEVEQRGHNRQGHEGVH 682
           HH    E      H  H G HG H  H          GH G H
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEH 567



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
 Frame = +2

Query: 554 HHRVPRETSRLLRHCAHQGLHGA----HLRHEVEQRGHNRQGHEGVH 682
           HH    E      H  H G HG+    H  HE    GH+   H G H
Sbjct: 560 HHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHH 606



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +2

Query: 551 GHHRVPRETSRLLRHCAHQGLHGAHLRHEVEQRGHNRQGHEGVH 682
           GHH           H  H G HG H  H     G +  GH G H
Sbjct: 588 GHHESHGHGHHAPAHHGHHGEHGVHHGHHGAGYGAH-HGHHGAH 630



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = +2

Query: 599 AHQGLHGAHLRHEVEQRGHNRQG--HEGVH 682
           AH G HGAH  H      H   G  H G H
Sbjct: 622 AHHGHHGAHHHHAPHHEHHEHHGDHHHGSH 651



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = +2

Query: 554 HHRVPRETSRLLRHCAHQGLHGAHLRHEVEQRGHNRQGHEGVH 682
           HHR   E        AH G HG H  H  E   H+   H G H
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHH 442



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = +2

Query: 554 HHRVPRETSRLLRHCAHQGLHGAHLRHEVEQRGHNRQGHEGVH 682
           HH  P           H G HG H  H          GH G H
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGH 673



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +2

Query: 554 HHRVPRETSRLLRHCAHQGLHGAHLRHEVEQRGHNRQGHEGVH 682
           HH    E      H  H G HG H  H  E   H+   H G H
Sbjct: 502 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGEH--HHAPAHHGHH 542


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 295 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 426
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 411 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 494
           HH    PTY    F+P  H++Y+ + L+
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 452  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 288
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 515 VYDHGRP*LGACGHHRVPRETSRLLRH 595
           V+D GR  +G+    R  RETS+LL+H
Sbjct: 208 VFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 515 VYDHGRP*LGACGHHRVPRETSRLLRH 595
           V+D GR  +G+    R  RETS+LL+H
Sbjct: 157 VFDDGRKKVGSSEGMRRSRETSQLLKH 183


>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 244 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 107
           N H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 210 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 255


>AF025464-1|AAN84805.1|  529|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform b protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 244 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 107
           N H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 232 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,863,643
Number of Sequences: 27780
Number of extensions: 410481
Number of successful extensions: 1348
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)