Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40748
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.1  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 443 ETPQARPSACLDLTNTYGTFLSS 375
           ++ +  P+  LDLT TY    SS
Sbjct: 176 DSKEEHPTCALDLTPTYAVVSSS 198


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 7   YTQNICDLSVELWQIPKFSLPYVKIISSVKREIAERLSFIN 129
           YT+ + D+   + Q P   L  +     +K EI  +  F+N
Sbjct: 32  YTKIMPDILTAIGQTPLIKLNNIPKSYGIKCEIYAKCEFLN 72


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 127 NSTPRHCKHG*NRSSSEPQ 183
           N+ P HCK    +S S P+
Sbjct: 345 NNCPLHCKPELGQSQSSPK 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,303
Number of Sequences: 438
Number of extensions: 4051
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)