Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40739
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.1  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   5.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 350 DDISSWDADF 379
           DDIS WD DF
Sbjct: 669 DDISGWDNDF 678


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 392 GQLSKNQHPMMICHQSSFPC 333
           GQ+S    P++ CH +   C
Sbjct: 351 GQISNGYTPVLDCHTAHIAC 370


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 392 GQLSKNQHPMMICHQSSFPC 333
           GQ+S    P++ CH +   C
Sbjct: 62  GQISNGYTPVLDCHTAHIAC 81


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 109 CQILSCNHQTTRPSLLM 159
           C I+SC+ QT  P  ++
Sbjct: 359 CNIVSCSPQTVHPETII 375


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 392 GQLSKNQHPMMICHQSSFPC 333
           GQ+S    P++ CH +   C
Sbjct: 351 GQISNGYTPVLDCHTAHIAC 370


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 81   NIQILEKTKMPNIKLQSSDNEAFVVDVEIAK 173
            NIQIL   ++    LQS D   +   VE A+
Sbjct: 1360 NIQILPSGELMLSNLQSQDGGDYTCQVENAQ 1390


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 81   NIQILEKTKMPNIKLQSSDNEAFVVDVEIAK 173
            NIQIL   ++    LQS D   +   VE A+
Sbjct: 1356 NIQILPSGELMLSNLQSQDGGDYTCQVENAQ 1386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,672
Number of Sequences: 438
Number of extensions: 4351
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)