Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40735
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    29   0.66 
SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    27   3.5  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    27   3.5  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    26   6.1  

>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 255 LFPCDICFLIEWLSNLLPNSGH 320
           +  C +C    W S L+PN GH
Sbjct: 636 MLKCSVCNFSNWKSKLIPNCGH 657


>SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 418 YNPKYNNTQNQKFFFLEISSFFQ--RNALEYAIFRCPEFGK-RFDNHSIKK 275
           Y P Y +  N    F E+   +Q  R A  Y +    E GK +FD+HSIKK
Sbjct: 15  YGPFYPDGMNTGVHFAELLIPYQVFREA-GYEVQLTSETGKCKFDDHSIKK 64


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 654 PRIDSLFLWNILIYKFTVKTCQLL 583
           P+ DSL  WNIL+ K + K  +LL
Sbjct: 57  PKKDSLLSWNILLKKGSYKENELL 80


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/94 (22%), Positives = 42/94 (44%)
 Frame = +2

Query: 224 KYINLILTLLLISM*HLFFNRMVVKSFAELRTSEYCVF*RVPLKKRRNFQKKKFLVLCIV 403
           +YI   +  L I + +LF     +K+  E +  EY       L   R+ ++       I+
Sbjct: 297 EYITSFMGFLSIILIYLFCEETYLKTITENKVQEYREITGNQLVHARSEEESLSARDIIM 356

Query: 404 IFRIIRLKESSLQNVIY*LQLIAKCVLMKMYVLL 505
            + +I LK  + + +++ + L    V   +Y+LL
Sbjct: 357 NYLLIPLKMLATEPIVFLVSLYCSFVYAIIYLLL 390


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +2

Query: 569 YF-SPFSNWHVFTVNLYIKIFHKNSESILGF----QNAIFTYQYGLKIIRIVK 712
           YF S FS        + +K F K  ESIL +     NA+FT QY   ++ I K
Sbjct: 191 YFKSKFSKLGPSEHEIEVKHFAKEFESILRYLYLDTNAVFTKQYNNALLSIGK 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,919
Number of Sequences: 5004
Number of extensions: 53428
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)