Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40721
(806 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 29 0.067
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 24 1.4
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 24 1.4
DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protei... 23 4.4
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 4.4
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 23 4.4
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 22 5.8
AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier... 22 5.8
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 22 5.8
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 7.7
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 7.7
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 28.7 bits (61), Expect = 0.067
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 618 ASSQQCCWK*LVYVVHSAWRIHVCILTHGHSLSWGIPSN 502
A++ CW + Y+V AW I ++ L WG +N
Sbjct: 65 AAAVMSCWMNVYYIVILAWAIFYFFMSMRSELPWGSCNN 103
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 24.2 bits (50), Expect = 1.4
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -3
Query: 600 CWK*LVYVVHSAWRIHVCILTHGHSLSW---GIPSNVR 496
CW + Y++ AW + +++ L W G P N R
Sbjct: 109 CWTNIYYIIILAWALFYLLVSLRIDLPWRTCGNPWNTR 146
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 24.2 bits (50), Expect = 1.4
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -3
Query: 600 CWK*LVYVVHSAWRIHVCILTHGHSLSW---GIPSNVR 496
CW + Y++ AW + +++ L W G P N R
Sbjct: 162 CWTNIYYIIILAWALFYLLVSLRIDLPWRTCGNPWNTR 199
>DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protein
protein.
Length = 424
Score = 22.6 bits (46), Expect = 4.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 754 VFLRQPPVGLFNLKG 710
+F PP G FN+KG
Sbjct: 225 LFYPYPPYGTFNIKG 239
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 22.6 bits (46), Expect = 4.4
Identities = 6/22 (27%), Positives = 12/22 (54%)
Frame = +2
Query: 719 IEQSNWWLAQEDHSFVDGGDFW 784
+++ + W++ H VD D W
Sbjct: 933 LQELSSWVSDNAHKVVDASDVW 954
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 22.6 bits (46), Expect = 4.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 461 FRRTNTPLFIWRSLNSCRTLRTLG 390
F TP+FI+ S N+ L LG
Sbjct: 96 FMMIKTPIFIYNSFNTGFALGNLG 119
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 22.2 bits (45), Expect = 5.8
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 190 YAKEAFFCHQEEEGNLQEG*TVVKEYRIKERDEIR 294
YA + FF ++ L+ + EYR+ E D ++
Sbjct: 82 YAADIFFAQTWKDNRLRLPENMTSEYRLLEVDWLK 116
>AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier
protein JHBP-1 protein.
Length = 253
Score = 22.2 bits (45), Expect = 5.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 174 LGDYRLR*RGVLLPSRRRGKSS 239
+ DY++ + +LLP R GKS+
Sbjct: 128 VADYKIEGKVLLLPVRGAGKSN 149
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 22.2 bits (45), Expect = 5.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 601 LLEVIGIRCPLSLAN 557
++E+IGI C L LAN
Sbjct: 206 IVELIGIICALCLAN 220
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.8 bits (44), Expect = 7.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 795 LRG--YQKSPPSTNEWSSCANHQLDCSI*RATGN 700
LRG + PPS E+S+ + LDC+ ATG+
Sbjct: 27 LRGPSFVMEPPSRVEFSNSSGAWLDCT---ATGS 57
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 7.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 795 LRG--YQKSPPSTNEWSSCANHQLDCSI*RATGN 700
LRG + PPS E+S+ + LDC+ ATG+
Sbjct: 27 LRGPSFVMEPPSRVEFSNSSGAWLDCT---ATGS 57
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,172
Number of Sequences: 438
Number of extensions: 4638
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -