Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40720
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    27   4.0  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   5.3  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   9.3  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   9.3  

>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 700 HDMHWDMYATVQLKVTMSVFTGS 632
           H++HW +  T + ++T+S F G+
Sbjct: 26  HELHWALNETEKKRITLSEFRGT 48


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 564  LSAYRPVPEKQVVYHLQSVEQDSEPVNTDMVTFNCTVAYMSQCMSCD 704
            +S Y P     V    + + ++S  ++  +   N    Y+S C+SCD
Sbjct: 1114 ISIYPPARFGDVTEVTKVLNRESVKLDHYLTKTNLNTCYISMCLSCD 1160


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 433  QTELSKTSYVEELGDGVPGLFAALTMIQMLNN 528
            Q  +S  +  + L  G PG   ALTMI M  N
Sbjct: 988  QVGISSQATFQSLEAGSPGAIMALTMIYMKTN 1019


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 133 GVDVFEV*SLFIFQAFFDCFIKSCHVEK 216
           GV+VFE+     FQ F + F +S H  K
Sbjct: 493 GVEVFEILDEMFFQQFTNVFGESKHFNK 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,236
Number of Sequences: 5004
Number of extensions: 55819
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)