Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40720
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   4.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 743 AVGAHGPTRGP 711
           A+GA+GP +GP
Sbjct: 198 AIGAYGPEKGP 208


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 489 PLCCSNNDPDAQQRWLSM 542
           P+ C N  P + + W+SM
Sbjct: 368 PIYCGNFPPRSMEPWISM 385


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 305 MHFDTTLAHIASLHAYAL 252
           M F TTLA +  LH Y L
Sbjct: 153 MRFTTTLACMMDLHYYPL 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,099
Number of Sequences: 438
Number of extensions: 3885
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)