Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40711
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.92 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.5  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 683 ASENSPSSIPSPTYQCTKARLAYMRS 606
           AS  SP++ PSP  QC        RS
Sbjct: 736 ASPRSPNASPSPAEQCASTTTITARS 761


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 466 NRFQGRYQLPATHRVPGGDLAKVQRAVCMLSNTTA 570
           NRF G Y++PA H +P         AV  +  T A
Sbjct: 435 NRFSGEYEIPA-HGLPPSATRYDLGAVATVGTTVA 468


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 680 SENSPSSIPSPTYQCTKARLAYMRSNLW 597
           SE   ++I   TYQC   + A+ + NL+
Sbjct: 50  SETPLTNIEEKTYQCLLCQKAFDQKNLY 77


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 553 LSNTTAIAEAWARLDHKFD 609
           L+NT  +   W  LD+ FD
Sbjct: 32  LTNTLNVIHKWKYLDYDFD 50


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 427 QNQAYYPIRRLVSNRFQGRYQ 489
           Q +A+Y +R   +N FQ +YQ
Sbjct: 17  QAKAHYSLRDFKANIFQVKYQ 37


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 371 MLYRGDVVPKDVNAAIAT 424
           M+Y G  V  D+NA IAT
Sbjct: 319 MMYLGTPVMPDLNALIAT 336


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 667 PPPYPHRRTSARKHAWRT 614
           P P+P R T A+ H + T
Sbjct: 417 PKPFPRRATLAQLHNFTT 434


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = -2

Query: 535 EPWPSRLRAHGGWLVVDTDLETGWTPVD 452
           + W S +  H    ++ TD    W P D
Sbjct: 83  DDWTSVMELHSWMTLMWTDSHLSWKPSD 110


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 237  YAPVISPRRPTMNSFPSPRSQTHASSPPTRW*NATP 344
            YA VI+P   T +  P  + QT  + P      +TP
Sbjct: 1273 YARVIAPTTITSSQSPGNQQQTIQTQPSRNNTYSTP 1308


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 245 SHLSEKAYHEQLSVAEITNACFEPANQM 328
           SH+  K  H  +SV    N   E AN+M
Sbjct: 135 SHIISKQLHIPVSVLMGANLASEVANEM 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,795
Number of Sequences: 438
Number of extensions: 4638
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)