Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40705
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    64   3e-11
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    29   0.94 
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.2  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    27   2.9  
SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces...    26   5.0  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   5.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   8.8  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
 Frame = +1

Query: 265 YVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLA-NNIGKDHLHGGINGFNKANWNSTV 441
           Y  +  P+ G T+GR ANRI   +F +DG  Y L  N   K  LHGG NGF+K  +   +
Sbjct: 409 YKLKENPFFGATIGRFANRIANGQFEVDGHLYTLCKNENNKTTLHGGNNGFDKQFFLGPI 468

Query: 442 -----DGTKVIFSYLSKDGEEGYPGDL 507
                D   + F  + KDG  G+P DL
Sbjct: 469 ARQYEDYNTLEFILVDKDGNNGFPSDL 495


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = -2

Query: 470 R*LNITLVPSTVEFQFALLNPLIPPCK*SFPMLLAS**VVPSMLNFAPPILLAQRPTVVP 291
           R LNI+++PS V     L+N L  P    +  ++AS   VP +LN  P +  +Q   ++P
Sbjct: 362 RILNISVIPSDVHSPPKLINYLTSPDTVIWSAVIAS-CAVPGILNPIPLMTRSQSHRLIP 420


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 335 FAPPILLAQRPTVVPKYGVFLFTYPSS 255
           F PP+   Q P  +P + ++L ++PS+
Sbjct: 464 FVPPVRTNQIPRQIPSHSIWLSSFPSA 490


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 719 PVGIDPESVSVILSAFITKDMVVDL 645
           P+GIDPE  S  L + + KD +  +
Sbjct: 255 PIGIDPEKFSDALKSDVVKDRIASI 279


>SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 72

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 47 RLNHSF*IINMVTLNVE 97
          RLNHS  +INM  +NVE
Sbjct: 29 RLNHSLQLINMSNMNVE 45


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 119 ETVSKFTWRASDGFSVSVISYGAT 190
           E +S+    A DG++VS+ +YG T
Sbjct: 554 EEISQLIQSAIDGYNVSIFAYGQT 577


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 276 SVHVPVESSKPRTTSLVIPYLSGT*IDCMVAPYEMTDTEKPS 151
           +V V ++S+     ++V P++SGT I  +V PY+    E  S
Sbjct: 644 NVSVNLKSNCFSKEAIVSPFISGTKIKNLVYPYDEYQLEASS 685


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,096
Number of Sequences: 5004
Number of extensions: 68090
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)