Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40705
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0315 - 3454846-3455465,3455562-3455663,3455828-3455954,345... 95 4e-20
02_04_0336 + 22121913-22122111,22122295-22122344,22122538-221226... 92 4e-19
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 84 1e-16
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447 83 2e-16
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791... 66 4e-11
04_04_0115 + 22868554-22868749,22868863-22868912,22870009-228701... 55 7e-08
06_03_0498 - 21432958-21434245,21434579-21435310,21435502-214357... 32 0.56
05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365 31 0.74
03_01_0537 + 4029790-4029827,4030048-4030171,4030491-4030754,403... 31 0.98
03_01_0566 - 4184379-4184491,4184616-4184726,4184800-4184889,418... 29 3.0
07_03_0722 + 20946201-20947327,20949531-20950791 29 4.0
12_02_1018 - 25344954-25344991,25345133-25345194,25345351-253454... 28 6.9
10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,713... 28 9.2
08_02_0632 + 19515234-19515374,19515489-19515656,19518907-195189... 28 9.2
07_03_0734 + 21067747-21068569,21069678-21069812,21069967-210701... 28 9.2
01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953 28 9.2
>10_01_0315 -
3454846-3455465,3455562-3455663,3455828-3455954,
3456698-3456727,3456828-3456877,3457004-3457106
Length = 343
Score = 95.5 bits (227), Expect = 4e-20
Identities = 60/164 (36%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Frame = +1
Query: 280 TPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWN---STVDGT 450
+PY G VGR ANRI KF+++G Y LA N G + LHGG+ GF+K W+ +
Sbjct: 65 SPYFGCIVGRVANRIKEGKFTLNGVEYSLAINNGPNSLHGGLKGFDKVVWDVVERKSECP 124
Query: 451 KVIFSYLSKDGEEGYPGDLILTLLMKLPKTMPCMSTLCXXXXXXXXXXXXXXXXXXXXAT 630
+ F Y SKDGEEGYPGD+ + LP + +TL
Sbjct: 125 SITFQYHSKDGEEGYPGDVTVRATYSLPDS----TTLRLDMEAVAENKATPINLAQHTYW 180
Query: 631 KLVSKRS-TTI--SLVINADKITETDSGSIPTGGFISVEGTPYD 753
L S T+ S+ I IT D +IPTG + V+GTP+D
Sbjct: 181 NLAGHNSGDTLDHSIQIWGKHITPVDENTIPTGEIMPVKGTPFD 224
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +2
Query: 161 SVSVISYGATIQSIQVPDKYGITSDVVLGFD 253
+ + ++GATI S+ VPD +G +DVVLGFD
Sbjct: 15 TAKIAAWGATITSLIVPDAHGNLADVVLGFD 45
>02_04_0336 +
22121913-22122111,22122295-22122344,22122538-22122661,
22122810-22122917,22123610-22124265
Length = 378
Score = 92.3 bits (219), Expect = 4e-19
Identities = 59/170 (34%), Positives = 81/170 (47%), Gaps = 7/170 (4%)
Frame = +1
Query: 265 YVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWN---- 432
YVN T Y G +GR ANRI A+F++DG TY+L N G + LHGG GF+K W
Sbjct: 82 YVN-GTAYFGGLIGRVANRIANARFTLDGKTYRLFRNDGNNSLHGGHRGFSKVIWTVKEH 140
Query: 433 -STVDGTKVIFSYLSKDGEEGYPGDLILTLLMKLPKTMPCMSTLCXXXXXXXXXXXXXXX 609
+ D ++ Y S DGE+G+PGDL + + +LP+ +
Sbjct: 141 VAGGDSPRITLYYHSFDGEQGFPGDLDVFVTYELPRPYVLAVRMNATARGKATPVNLAHH 200
Query: 610 XXXXXATKLVSKRSTTISLV-INADKITETDSGS-IPTGGFISVEGTPYD 753
A + S V I+A + T D+ + IPTG V GTPYD
Sbjct: 201 AYWNLAGEGSGAASVLAETVRIHASRYTPVDAATLIPTGRVAPVAGTPYD 250
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +2
Query: 158 FSVSVISYGATIQSIQVPDKYGITSDVVLGFD 253
FS+ V ++GATI S+ +PD G +DVVLG+D
Sbjct: 46 FSIRVTNWGATIMSVILPDSKGNLADVVLGYD 77
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 84.2 bits (199), Expect = 1e-16
Identities = 55/171 (32%), Positives = 77/171 (45%), Gaps = 7/171 (4%)
Frame = +1
Query: 262 GYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTV 441
G N +PY G VGR ANRI KF+++ Y LA N + LHGG GF+K W
Sbjct: 198 GVPNGTSPYFGCIVGRVANRIKDGKFTLNDKQYSLAINNPPNTLHGGFKGFDKIIWEVAE 257
Query: 442 ----DGTKVIFSYLSKDGEEGYPGDLILTLLMKLPKTMPCMSTLCXXXXXXXXXXXXXXX 609
+ + F Y SKDGEEG+PGD+ +T + + +TL
Sbjct: 258 YVKGENPSITFKYYSKDGEEGFPGDVSVTARYSILAS----TTLKLEMEAIPLNKATPIS 313
Query: 610 XXXXXATKLVSKRSTTI---SLVINADKITETDSGSIPTGGFISVEGTPYD 753
L S + ++ I +IT D SIPTG + V G+P++
Sbjct: 314 LAQHTYWNLAGHNSGDVLAHTVQILGSQITPVDETSIPTGEMMPVSGSPFN 364
Score = 37.1 bits (82), Expect = 0.015
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 170 VISYGATIQSIQVPDKYGITSDVVLGFD 253
+ + GAT+ S+ VPD G+ DVVLGFD
Sbjct: 122 ITNVGATVTSLLVPDNNGVLGDVVLGFD 149
>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
Length = 309
Score = 83.4 bits (197), Expect = 2e-16
Identities = 57/173 (32%), Positives = 79/173 (45%), Gaps = 7/173 (4%)
Frame = +1
Query: 256 LDGYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWN- 432
+ YVN +T Y G VGR ANRI G +F++ G + N GK+ LHGG GFN+ W+
Sbjct: 17 IGSYVN-DTTYFGALVGRVANRIAGGRFTVKGHAFHTYKNDGKNTLHGGHRGFNQVFWSV 75
Query: 433 ---STVDGTKVIFSYLSKDGEEGYPGDLILTLLMKLPKTMPCMSTLCXXXXXXXXXXXXX 603
+T + F Y S DGE+G+PG L + + K+ T+
Sbjct: 76 RERATGHFPYITFYYRSYDGEQGFPGALDVLVTYKIDGDYSFSVTMYARPVDDGKPTPVN 135
Query: 604 XXXXXXXATKLVSKRSTTI---SLVINADKITETDSGSIPTGGFISVEGTPYD 753
L + TI S+ I A +T +G IPTG V GTP+D
Sbjct: 136 LAQHTYW--NLRGHGNGTILDHSVQIFASAVTPVGAGLIPTGAVSPVSGTPFD 186
>04_04_0116 +
22877296-22877482,22877578-22877627,22879057-22879180,
22879266-22879373,22879462-22880084
Length = 363
Score = 65.7 bits (153), Expect = 4e-11
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Frame = +1
Query: 244 GL*RLDGYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKA 423
GL + YVN +T Y G GR RI +F +DG Y N G++ +HGG GF+K
Sbjct: 71 GLDTIAEYVN-DTNYFGPVTGRVGQRIARGRFVLDGKVYHTYINDGRNAIHGGHRGFSKV 129
Query: 424 NWN-----STVDGTKVIFSYLSKDGEEGYPGDL 507
W D + Y S DGE+G+PGDL
Sbjct: 130 IWTVKEYVGGGDSPYITLYYRSFDGEQGFPGDL 162
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +2
Query: 119 ETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGFD 253
+TV ++ R D FSV + ++GAT+ S+ +PD G +DVVLG D
Sbjct: 30 KTVGEYVLRKGD-FSVKITNWGATMMSVVLPDSKGNLADVVLGLD 73
>04_04_0115 +
22868554-22868749,22868863-22868912,22870009-22870195,
22870226-22870333,22872501-22873165
Length = 401
Score = 54.8 bits (126), Expect = 7e-08
Identities = 56/191 (29%), Positives = 72/191 (37%), Gaps = 28/191 (14%)
Frame = +1
Query: 265 YVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHG--------------- 399
YVN +T Y G VGR ANRI A+F +DG Y L N GK+ LHG
Sbjct: 81 YVNSST-YFGALVGRVANRIAKARFVLDGKAYHLYPNDGKNTLHGILEKFPEVQEIHGAW 139
Query: 400 ------GINGFNKANWN-----STVDGTKVIFSYLSKDGEEGYPG--DLILTLLMKLPKT 540
G GF+ W D + Y S DGE+G+PG D+ +T + P
Sbjct: 140 FISTNSGHRGFSNVTWTVKEHVGGGDAPYITLYYHSFDGEQGFPGALDVYVTYQLSGPYV 199
Query: 541 MPCMSTLCXXXXXXXXXXXXXXXXXXXXATKLVSKRSTTISLVINADKITETDSGSIPTG 720
+ + T T+ L A + T D+ IPTG
Sbjct: 200 L-SVHMNATAAGKATPVNLAQHSYWNLGGTGSGDILGNTVQLF--ASRYTPVDAELIPTG 256
Query: 721 GFISVEGTPYD 753
V GTP D
Sbjct: 257 QVAPVTGTPCD 267
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +2
Query: 98 DFGQHHGETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGFD 253
D + TV + R D FS+ V ++GA I S+ +PD G DVVLG+D
Sbjct: 26 DAAERKATTVGVYELRKGD-FSIRVTNWGAVIMSVVLPDSRGKLDDVVLGYD 76
>06_03_0498 -
21432958-21434245,21434579-21435310,21435502-21435788,
21435955-21436026,21436130-21436264,21436887-21436925
Length = 850
Score = 31.9 bits (69), Expect = 0.56
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 189 PYSQFRYRTNTESPV-TLFWALTTRRVREQKHTVLRDHGRSLCQQDRRSKIQHRWHDLST 365
P FR+RT+ + V +LFW T R + V +D + + ++ ++ W D
Sbjct: 403 PLFYFRFRTDENNVVKSLFWDKTGRTFNSEDEEVYKDFHDIVTKSQTEAEFEYLWKDFIR 462
Query: 366 R 368
R
Sbjct: 463 R 463
>05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365
Length = 144
Score = 31.5 bits (68), Expect = 0.74
Identities = 22/78 (28%), Positives = 39/78 (50%)
Frame = -2
Query: 680 SAFITKDMVVDLLDTSFVASQIKIRMVRQIYNGLLSCRRHKVDMQGIVFGNFISNVSIRS 501
+A +T+D++VD+L V S + + V + + GL+S H+ + + G F S S
Sbjct: 20 AAELTEDLIVDILSRLPVKSVCRCKCVSRRWRGLISDPDHRKKLPQTLAGFFYS--SENE 77
Query: 500 PGYPSSPSFDR*LNITLV 447
+P +F + TLV
Sbjct: 78 SSFPDEETFPIVICETLV 95
>03_01_0537 +
4029790-4029827,4030048-4030171,4030491-4030754,
4030847-4030978,4031068-4031184,4031687-4031963,
4037100-4037137
Length = 329
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 388 HLHGGINGFNKANWNSTVDGTKVIFSYLSKDGEEGYPGDLILTLLMKLP 534
H+HG F++ N V +FSY SK G G D +L+L+ K P
Sbjct: 159 HIHGNKEVFDRLKNNPKVHFVGNLFSYKSKYGVNG--KDKLLSLIRKFP 205
>03_01_0566 -
4184379-4184491,4184616-4184726,4184800-4184889,
4184996-4185113
Length = 143
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 68 IINMVTLNVEDFGQHHGETVSKFTWR 145
I ++VTL D QHHG++ KFT R
Sbjct: 82 IRSLVTLAFADLLQHHGQSARKFTTR 107
>07_03_0722 + 20946201-20947327,20949531-20950791
Length = 795
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = -2
Query: 680 SAFITKDMVVDLLDTSFVASQIKIRMVRQIYNGLLSCRRHKVDMQGIVFGNFISNVS 510
+A +T D+VV++L V S + + V + + L++ R H+ + + G F ++S
Sbjct: 430 AASLTDDLVVEILRRLPVRSVCRFKRVCRSWRNLIADREHRKKLPQTLSGFFYKSIS 486
>12_02_1018 -
25344954-25344991,25345133-25345194,25345351-25345483,
25346119-25346182
Length = 98
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +1
Query: 400 GINGFNKANWNSTVDGTKVIFSYLSKDGEEGYPGDLILTLLMKLPKTMPCM 552
G+NG N++ ++G++ + +Y KDG+ GD+ + ++ K + M
Sbjct: 28 GVNGMNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIM 78
>10_03_0021 +
7129786-7130117,7130227-7130347,7131048-7131136,
7131375-7131459,7131609-7131771,7132861-7132937,
7133016-7133160,7133236-7133537,7133615-7133720,
7134781-7134935,7135556-7135712,7135799-7135891,
7136232-7136359,7136439-7136696,7136855-7137145,
7137235-7137318,7138335-7138468,7138557-7138784,
7139778-7139958,7140021-7140108,7140268-7140434,
7140750-7141012,7141117-7141120
Length = 1216
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 378 NVVSELISRAIDAEFCSADPVGTATDRG 295
N+VS+ + R + + C+ PVG+ +RG
Sbjct: 299 NLVSDYVLRVLGLDICADTPVGSDMERG 326
>08_02_0632 +
19515234-19515374,19515489-19515656,19518907-19518993,
19519551-19519685,19519778-19519882,19519968-19520059,
19520147-19520252,19520320-19520424,19520516-19520929
Length = 450
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = +3
Query: 120 RRFQN-SHGGHLMASQCPSFHMGLPYSQFRYRTNTESPVTLFWALTTRRVREQKHTVLRD 296
R +QN S+ C PY F+Y T P + + L KH V
Sbjct: 89 RNYQNLSYAREEALKDCKKVEKDSPYYDFQYNTRRARPSIVHFQLRNLVWATTKHDVYTV 148
Query: 297 HGRSL 311
H +S+
Sbjct: 149 HNQSV 153
>07_03_0734 +
21067747-21068569,21069678-21069812,21069967-21070100,
21070182-21070449,21070472-21070709,21070787-21070937,
21071040-21071387
Length = 698
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = -2
Query: 668 TKDMVVDLLDTSFVASQIKIRMVRQIYNGLLSCRRHKVDMQGIVFGNFISNVSIRSPGYP 489
T +++++D S + + +M++ I+ GLL + + D + N + + S S P
Sbjct: 589 TMGTILEMMDPSLTSHAPRDQMLKCIHIGLLCVQDNPADRPMMSTVNVMLSSSTVSLQSP 648
Query: 488 SSPSF 474
S PSF
Sbjct: 649 SKPSF 653
>01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953
Length = 946
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/74 (28%), Positives = 26/74 (35%)
Frame = +1
Query: 271 NRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGT 450
N NTP G T G A + Q A + L G GF K DGT
Sbjct: 557 NANTPGGGATPGMAAAASSSPSYRFPFAALQDATGNFDEGLVIGEGGFGKVYAAVLQDGT 616
Query: 451 KVIFSYLSKDGEEG 492
KV + + +G
Sbjct: 617 KVAVKRANPESRQG 630
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,846,580
Number of Sequences: 37544
Number of extensions: 449022
Number of successful extensions: 1079
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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