Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40705
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical ...    56   3e-08
AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical...    56   3e-08

>AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical
           protein C01B4.6 protein.
          Length = 330

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +1

Query: 289 LGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGTK-VIFS 465
           +G TVGR ANRI  +    DG  Y +  N G  +LHGG NG     W       + V FS
Sbjct: 57  IGKTVGRVANRIKNSTLHFDGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFS 116

Query: 466 YLSKDGEEGYPGD 504
             + + ++G PGD
Sbjct: 117 VRANEQDDGLPGD 129



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 155 GFSVSVISYGATIQSIQVPDKYGITSDVVLGFD 253
           G + +++ +GAT+  +  PDK G   D+VLGFD
Sbjct: 13  GLTATLLPFGATLAKLTFPDKNGKNQDLVLGFD 45



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 492 IPG*SYTNITYEVTEDNALHVDFMSXXXXXXXXXXXXHSYFNLAGHET 635
           +PG +  ++TY V + N L ++  +            H+Y+NL G +T
Sbjct: 126 LPGDAKIDVTYTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDGSDT 173


>AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical
           protein Y19D10A.16 protein.
          Length = 330

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +1

Query: 289 LGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGTK-VIFS 465
           +G TVGR ANRI  +    DG  Y +  N G  +LHGG NG     W       + V FS
Sbjct: 57  IGKTVGRVANRIKNSTLHFDGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFS 116

Query: 466 YLSKDGEEGYPGD 504
             + + ++G PGD
Sbjct: 117 VRANEQDDGLPGD 129



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 155 GFSVSVISYGATIQSIQVPDKYGITSDVVLGFD 253
           G + +++ +GAT+  +  PDK G   D+VLGFD
Sbjct: 13  GLTATLLPFGATLAKLTFPDKNGKNQDLVLGFD 45



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 492 IPG*SYTNITYEVTEDNALHVDFMSXXXXXXXXXXXXHSYFNLAGHET 635
           +PG +  ++TY V + N L ++  +            H+Y+NL G +T
Sbjct: 126 LPGDAKIDVTYTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDGSDT 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,691,758
Number of Sequences: 27780
Number of extensions: 388857
Number of successful extensions: 992
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)