Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40701
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    32   0.057
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   2.8  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   4.9  
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    25   6.5  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.5  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   8.6  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   8.6  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   8.6  

>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 110 HSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFA 235
           +S F +SL +R + +      D +  L +YGE LY NLI+ +
Sbjct: 35  YSTFLQSLTDRDFDVKTSYIKDESAKLFEYGERLYDNLILLS 76


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = -2

Query: 557 TKLLSLSTISPGPSNSKLCILSPTIVEP*LGLR*--TTMRVWSPSSVTS*LKWSMTAADS 384
           T LL  S+I    S+S   +  PT+     G     TT  VW     T  L    T   S
Sbjct: 429 TSLLRRSSIDGSASSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTS 488

Query: 383 SSISNPHSEAISLYTSPAAAL 321
           SSI +  +EA       ++A+
Sbjct: 489 SSIFSTATEATDTSVQTSSAI 509


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +2

Query: 53  VCADHETLVLIDNLNIKETHSQFFKSLQERGYGLT-FKL--ADDANLVLSKYGEYLYKNL 223
           VC D E L +IDN   K       +  QE   G + FK    D+   ++S Y   L+ NL
Sbjct: 719 VCNDSEALKIIDNCIDKN-----MQKSQEGFQGPSPFKADENDEDIFIISLYHSSLFLNL 773

Query: 224 IVFAPSVLEFVD 259
             F   ++ F+D
Sbjct: 774 KFFVSLIIGFLD 785


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 586 AVESADRIGKPSCYPCPQLVQ 524
           ++++A+RI +  CY CP +V+
Sbjct: 233 SLKTAERIKEECCYVCPDIVK 253


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +2

Query: 89  NLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSVLEFV 256
           NLN +      F +L+E            +NLV   YGE  Y N++   P V E V
Sbjct: 3   NLNTELDFFVSFSALKEENISQLKVYWAQSNLVELYYGESFYINIVCSRPIVDENV 58


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 7   ENHDNFRDIDHFF 45
           EN+DNF+D+D  F
Sbjct: 523 ENNDNFKDLDELF 535


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 459 VNYNASVVSFISHIIVEVVYDCCRFLV 379
           +NYNA+VV F S I+ +      +FL+
Sbjct: 1   MNYNANVVKFHSTILHKFALKISKFLI 27


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 398 TAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSS 291
           T A SS  S  HSE I+  TS +         PPSS
Sbjct: 106 TKATSSRTSYDHSEGITSTTSASPPSAPAPPLPPSS 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,233
Number of Sequences: 5004
Number of extensions: 47887
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)