Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40697
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   1.6  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   2.1  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    25   8.7  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   8.7  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   8.7  

>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 360 GDIGDVLGTNNNEKGVNWDENT*NGND 440
           GD G +L T +  KG+ WD N   GND
Sbjct: 709 GDNGIILATAHQSKGLEWD-NVQLGND 734


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 28/115 (24%), Positives = 52/115 (45%)
 Frame = -2

Query: 589 DLLILNCLSISTKDLFPISLRINQILPTNLKKYCYNYIDNPTNLYLFILRSFPFHVFSSQ 410
           DLL +   S+++   FP++LRI++IL    + Y  +   +   ++ FI+ S      +S+
Sbjct: 245 DLLPIITASLASMSDFPVALRISRILNIIFQHYVTSLTLDIEVIFSFIISSLD----NSE 300

Query: 409 LTPFSLLFVPKTSPISPKTTDFYMYFYLIKYIKPNNN*DLLLIYMLV*TLNKFIN 245
                 LF+     I   T   Y+ + L       N     +I  LV +L++ +N
Sbjct: 301 AAWKKALFLEVLRSIFSNTNLLYLMYTLF----DGNEGRKPIIKKLVTSLSRIVN 351


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 501 KFVGKIWFIRSEIGNKSLVEID 566
           KFVG++W +  E  N  L+E +
Sbjct: 657 KFVGQLWKLYMENSNSDLIETE 678


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 439 SFPFHVFSSQLTPFSLLFVPKTSPISPKTTDFYMYFYLIKYI-KPNNN 299
           SF  H F   L+PFS L+VP++   S      Y Y  + K I +P NN
Sbjct: 343 SFKQHFF---LSPFSRLYVPRSHRRS-SDRSHYSYVVIQKGITRPLNN 386


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 439 SFPFHVFSSQLTPFSLLFVPKTSPISPKTTDFYMYFYLIKYI-KPNNN 299
           SF  H F   L+PFS L+VP++   S      Y Y  + K I +P NN
Sbjct: 343 SFKQHFF---LSPFSRLYVPRSHRRS-SDRSHYSYVVIQKGITRPLNN 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,936
Number of Sequences: 5004
Number of extensions: 49215
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)