Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40693
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.          123   2e-30
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   3.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   7.9  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score =  123 bits (296), Expect = 2e-30
 Identities = 54/70 (77%), Positives = 63/70 (90%)
 Frame = +1

Query: 46  MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGG 225
           MS QDYVDKQL+ASRCVTKAAIAGHDGN+WAKSEGFE+SK+E+ K+V GFE + +LTS G
Sbjct: 1   MSCQDYVDKQLLASRCVTKAAIAGHDGNLWAKSEGFEVSKEELTKLVQGFEEQDILTSSG 60

Query: 226 VTIAGTRYIY 255
           VT+AG RYIY
Sbjct: 61  VTLAGNRYIY 70



 Score =  109 bits (262), Expect = 3e-26
 Identities = 49/63 (77%), Positives = 57/63 (90%)
 Frame = +3

Query: 234 SGHAVHLLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLIT 413
           +G+    LSGTD +IRAKLGKVGVHCMKT QAVV+SLYE+PIQPQQAASVVEKLG+YL++
Sbjct: 64  AGNRYIYLSGTDRVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVS 123

Query: 414 CGY 422
           CGY
Sbjct: 124 CGY 126


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -3

Query: 624 KRVQNPQNNHMCTLNSSH*LRRHNLSNIKTNERSSYHFMNIQNAVTYFPV 475
           K + +  NN +   N  +    +N +N   N++  Y+ +NI+      PV
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIEQIPVPVPV 128


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -3

Query: 624 KRVQNPQNNHMCTLNSSH*LRRHNLSNIKTNERSSYHFMNIQNAVTYFPV 475
           K + +  NN +   N  +    +N +N   N++  Y+ +NI+      PV
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIEQIPVPVPV 128


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 362 LDGFFIERNDHSLLCLH 312
           + G  IER DH++LC++
Sbjct: 327 ISGAPIERPDHAVLCVY 343


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -2

Query: 145 PTL-PTHCHHDRQWQLL*HI 89
           PT+ P H HH  Q Q L H+
Sbjct: 345 PTMGPPHHHHHHQTQSLQHL 364


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 58  DYVDKQLMASRCVTKAAIAGHDGN 129
           D +   L   RC  K    G DGN
Sbjct: 447 DVISGNLEKGRCTGKIVTVGSDGN 470


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 410 YLWLLEVEARRDLRVL*DNIFSTGK*VTAFCIFIK 514
           +L  LEVE  R LR     IF++GK    F + I+
Sbjct: 119 HLLNLEVERWRPLRSRLSPIFTSGKLKEMFYLIIE 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,852
Number of Sequences: 438
Number of extensions: 4732
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)