Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40692
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.18 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.18 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.98 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.3  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        24   1.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   6.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = -2

Query: 386 YHPFCWWYNNRFIITRIFC-KIFGINYINYPHRHRQWYCYGAQSHV 252
           Y+P CWW     I T   C  +F  N I +       Y Y   SHV
Sbjct: 485 YYPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHV 530



 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 606 QGIGYKCCVMVVWQLSLHCCIYWMW 680
           +GIGY  CV+  W  +++  I   W
Sbjct: 98  KGIGYATCVLSCW-TNIYYIIILAW 121


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = -2

Query: 386 YHPFCWWYNNRFIITRIFC-KIFGINYINYPHRHRQWYCYGAQSHV 252
           Y+P CWW     I T   C  +F  N I +       Y Y   SHV
Sbjct: 538 YYPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHV 583



 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 606 QGIGYKCCVMVVWQLSLHCCIYWMW 680
           +GIGY  CV+  W  +++  I   W
Sbjct: 151 KGIGYATCVLSCW-TNIYYIIILAW 174


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 9/32 (28%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 288 MSMWIIN--IIYSKYLAENSSYDEPIVIPPTK 377
           + ++++N  I++   + +N  +DE ++IPP K
Sbjct: 403 IKVFVVNKDILHEHNVDDNEDHDENMIIPPKK 434


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 661 QCKLSCHTTITQHLYPIPWSTFLKINF 581
           +CKL+    +T  L+ + W+ +L INF
Sbjct: 273 ECKLAKVALMTISLWFMAWTPYLVINF 299


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 661 QCKLSCHTTITQHLYPIPWSTFLKINF 581
           +CKL+    +T  L+ + W+ +L INF
Sbjct: 23  ECKLAKVALMTISLWFMAWTPYLVINF 49


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 119 LVK*LLPAYDLGFKSCLKATVELHILFLLSLN 24
           L K LL  YD G +    ++  L ++F LSL+
Sbjct: 9   LTKYLLDGYDAGVRPAENSSQPLAVVFGLSLH 40


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 517 FHIFHYFIKSY*SKVTFEEE 576
           FHI  Y I +  S  T EEE
Sbjct: 127 FHITQYMISNANSNTTSEEE 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,083
Number of Sequences: 438
Number of extensions: 4411
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)