Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40691
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 405 FNNLICRF*KQCLIWRHLVKYN 340
           F N  C F +    W++ V++N
Sbjct: 534 FQNTFCYFRRNAATWKNAVRHN 555


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 186 IQIVMWGRSPRILPMDLSSKM 248
           I+ ++W R  R+LP++   K+
Sbjct: 519 IESIVWERDTRVLPINRKQKV 539


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 321  KIINSKSCISQDVSK*DIVFRIYK 392
            KI+ S++   Q V + +I+F IYK
Sbjct: 1535 KIVVSRNKAYQKVEENEIIFEIYK 1558


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 732 PDGDQLLQDHQWPGGVY 682
           P GD  L + +W GG Y
Sbjct: 20  PGGDYSLDEIEWDGGDY 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,694
Number of Sequences: 438
Number of extensions: 5435
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)