Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40690
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.6  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    26   4.6  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.1  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 562  LLAHGSGLGDRNLAFTLHAGGTFLGAITDNTPSEDSRDST 443
            L  + +G G     F+L+ GGT+    T +TPSE  R  T
Sbjct: 890  LYVNHTGAGADKYRFSLNYGGTYSKWKTVSTPSEKLRKPT 929


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 222 CRGSRPW--LQHQSDKDKFQVNLDVQHFAPEEISVK 323
           CRGS PW  LQ  + + K+Q   D +   P E+  K
Sbjct: 208 CRGSLPWQGLQADTKEQKYQRIRDTKIGTPLEVLCK 243


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 319 LKRRTATSWLKANTRRRKISMVTYRVNSLVATLCR 423
           LKR    S+  ANT  RK ++V       +AT C+
Sbjct: 126 LKRPAKVSFALANTPSRKGNLVPQSPRRTIATTCK 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,568
Number of Sequences: 5004
Number of extensions: 60957
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)