Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40686
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.3  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 583 YIKIKHFCTLRYI 545
           Y+K+KH  TL YI
Sbjct: 446 YVKVKHSATLGYI 458



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 188 GNTV--IGRRASRSSFNIKIIECGGLYASLLPANDS 87
           G T+  IGR+    S NIKII      + L P++DS
Sbjct: 217 GGTISGIGRKLKELSPNIKIIAVDPKGSILDPSSDS 252


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 724 GERERKRERASEIVVSGVGTWPSSTRG 644
           G R++K +    ++ SG+G+W   T+G
Sbjct: 134 GLRKKKHKVNPLLMQSGMGSWEVYTKG 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,000
Number of Sequences: 438
Number of extensions: 3312
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)