Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40673
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    24   1.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   7.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   7.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.7  

>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 376 PSAPRGSVWVPPGTPP 329
           P + RG V  PPG PP
Sbjct: 42  PRSNRGPVLFPPGPPP 57


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 385 PCQPSAPRGSVWVP 344
           PC PS PRG   VP
Sbjct: 393 PCTPSPPRGPGGVP 406


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 436 GCEEDCEEFSWVLKQLMQEN 495
           GCE  CE++   LK L  E+
Sbjct: 287 GCEVICEDYQAFLKHLNTEH 306



 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 388 APCQPSAPRGSVWVPPGTPP 329
           AP + S P  S   PPG PP
Sbjct: 33  APQRGSPPNPSQGPPPGGPP 52


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 182 DGVWDVMSNDALCAYVHSLLQLTDALWLSPI 274
           DG+ D+    A   ++  +    DALWLSPI
Sbjct: 46  DGIGDLNGITARMDHIADIG--ADALWLSPI 74


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 86  STASCTDNHQALEKQ 42
           +T SC + HQ+L++Q
Sbjct: 323 NTLSCWNEHQSLDRQ 337


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +3

Query: 144 DQKQKMNSWYWRVMEFGM 197
           ++ +K+++ YW  +EFG+
Sbjct: 369 EEIEKLSTIYWFTVEFGL 386


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 282 NDLIGDSHKASVSCSKECTY 223
           ND I DS+K+++ C K  TY
Sbjct: 138 NDRI-DSYKSNLKCDKCSTY 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,472
Number of Sequences: 438
Number of extensions: 4456
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)