Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40624
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   4.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   7.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   7.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   10.0 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   10.0 

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 97  SLMREGK*NKCAGHWV 144
           +LM+E    K AGHWV
Sbjct: 65  ALMKERIRQKAAGHWV 80


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 97  SLMREGK*NKCAGHWV 144
           +LM+E    K AGHWV
Sbjct: 65  ALMKERIRQKAAGHWV 80


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 97  SLMREGK*NKCAGHWV 144
           +LM+E    K AGHWV
Sbjct: 65  ALMKERIRQKAAGHWV 80


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = +2

Query: 554 SNICKKQNNLKFVKLSATTSGINDVKEIV 640
           S++ ++  NLK  + S+  +G+N+++  +
Sbjct: 173 SSVIEEAQNLKMSRGSSVVTGMNNIETYI 201


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = +2

Query: 554 SNICKKQNNLKFVKLSATTSGINDVKEIV 640
           S++ ++  NLK  + S+  +G+N+++  +
Sbjct: 173 SSVIEEAQNLKMSRGSSVVTGMNNIETYI 201


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 258 FYMKIWDDTKKGDGINKEGKMVV 190
           F  + W+  KK   +N EG+ +V
Sbjct: 17  FDSETWEAIKKDAAVNMEGQFLV 39


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 258 FYMKIWDDTKKGDGINKEGKMVV 190
           F  + W+  KK   +N EG+ +V
Sbjct: 17  FDSETWEAIKKDAAVNMEGQFLV 39


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 517 QSCNFSTFFLFSF 479
           + CNF  + LFSF
Sbjct: 141 ERCNFKAYCLFSF 153


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 645 ILTISFTSLMPDVVADSFTNFKLFCFLQIL 556
           ++T+SFT+ +  + A S  +  L   L +L
Sbjct: 424 VITVSFTATLASIGAASIPSAALITMLIVL 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,903
Number of Sequences: 438
Number of extensions: 4456
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)