Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40618
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   4.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   4.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.5  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 43  RSVSDNDIRKYEMF 84
           +S +D+DI KY+MF
Sbjct: 190 KSCTDSDIEKYKMF 203


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 45  LRVRQRHPQVRDVRADPAAEPRLRNQ 122
           ++V Q+   + D   DP++EP + +Q
Sbjct: 110 MQVPQQGASIDDSDPDPSSEPTVHSQ 135


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 45  LRVRQRHPQVRDVRADPAAEPRLRNQ 122
           ++V Q+   + D   DP++EP + +Q
Sbjct: 558 MQVPQQGASIDDSDPDPSSEPTVHSQ 583


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 114 RNQLQIPNKRGSYRGHGYFS 173
           R +   P+K  +YR HGY S
Sbjct: 603 RMRYAAPHKAFTYRMHGYAS 622


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,676
Number of Sequences: 438
Number of extensions: 2702
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)