Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40610
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6 |Schizosac... 30 0.27
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.1
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 27 1.9
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 27 3.3
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 27 3.3
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 27 3.3
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 26 4.4
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 26 5.8
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 26 5.8
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 26 5.8
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy... 26 5.8
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.6
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 25 7.6
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 25 7.6
>SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 136
Score = 30.3 bits (65), Expect = 0.27
Identities = 15/67 (22%), Positives = 35/67 (52%)
Frame = +2
Query: 311 SMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESLMKLVSDIKQYLI 490
++L F++I+ +A E + + + + ++++ ++VRA E L+ + IK Y +
Sbjct: 27 TILSRFQDILDIAINEGKDKYT----VAPEVYQIECHTVSMVRAVEQLLDVSRQIKSYWL 82
Query: 491 LNDFPSS 511
N +S
Sbjct: 83 TNSLSTS 89
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/81 (20%), Positives = 37/81 (45%)
Frame = +2
Query: 173 TKSDTNEFKKTPQFKQQRTNQHAAEST*NKDALLKSYTTRLKEDVKSMLENFEEIIKLAK 352
TK DT ++TP K Q+ A + +KD+ K K+ + + ++ K+
Sbjct: 55 TKKDTLVNRETPSKKSQKLETSDALKSKSKDSSKKEPVVVPKKGTPKIFQENHKVKKVKS 114
Query: 353 VENESQLNRMTQIEQDTFEMQ 415
+ E + + ++DT +++
Sbjct: 115 PKKEKLVGKNPAEKEDTTDVE 135
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 275 KSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIE 394
K+YT + KED +L E I K ENE LN T +E
Sbjct: 98 KAYTAKTKEDFAYLLSQLETIFK----ENEI-LNEFTPVE 132
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 308 KSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESLMKLVSDIKQYL 487
+S++EN +I LAK+ NE + + +FE QV + + A L K SD+ +
Sbjct: 441 QSIVENMRAVINLAKLTNEI-CDSLYWNPSPSFESQVNSVRRIYARLELWK--SDLHSSV 497
Query: 488 ILND 499
+ ++
Sbjct: 498 VFDE 501
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 26.6 bits (56), Expect = 3.3
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +2
Query: 209 QFKQQRTNQHAAEST*NKDALLKSYTTRL-KEDVKSMLENFEEIIKLAKVENESQLNRMT 385
QF NQ ES + LK T L E + M K+A + E +L +
Sbjct: 191 QFHISTYNQLLGESNNYRWGSLKLLKTPLCAESIGEMGFAVGGTSKIAIINREGKLTQSL 250
Query: 386 QIEQDTFEMQVRAANIVRAG-ESLMKLVSDIK 478
Q + D F ++ N+V AG + LV D++
Sbjct: 251 QSKGDVFSLKYLGDNLVIAGCRNKSVLVYDLR 282
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +2
Query: 215 KQQRTNQHAAEST*NKDALLKSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIE 394
K+ + + A ES K K +RL+ED++ L FEE + K +++ + +E
Sbjct: 136 KKLESRRQAYESLLQKSFKEKKEDSRLEEDIRLALYKFEESTEQVK----NRMIALKDVE 191
Query: 395 QDTFE 409
D ++
Sbjct: 192 ADQYQ 196
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/90 (18%), Positives = 36/90 (40%)
Frame = +2
Query: 203 TPQFKQQRTNQHAAEST*NKDALLKSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRM 382
TP K Q + H S D + ++ ++ + + F + I V S ++
Sbjct: 77 TPTNKYQEPSFHTKTSLNGSDTISSNFLSKYEYSNGTSTSEFIDSISPPLVNETSTISSS 136
Query: 383 TQIEQDTFEMQVRAANIVRAGESLMKLVSD 472
++EQ+ +V NI+ + + + D
Sbjct: 137 KKLEQNYSVTEVIDTNIITSSSVTLPISED 166
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 270 SASLF*VDSAACWFVLCCLNWGVFLNSFVSLFVIFRQSTLGGNKTTQP*SYFTFCT 103
S S+F + C L L +G F+ F ++ ++FR+ LGG +P Y + T
Sbjct: 21 SKSIF--NELRCPVTLTFLQFG-FVAFFSAVCLLFRKQFLGGTGIQKPSKYVLYTT 73
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 228 VLCCLNWGVFLNSFVSLFVIFRQSTL 151
+LCCL +F + +LFV+ ST+
Sbjct: 218 ILCCLGSAIFAKASNALFVVIILSTI 243
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 5.8
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Frame = +2
Query: 296 KEDVKSMLENFEEIIKL---AKVENESQLNRMTQIEQD----TFEMQVRAANIVRAGESL 454
+E+ K L+N + + +N+ N+MT+I+Q FE ++A+ ESL
Sbjct: 44 EEENKESLQNDSHSVSQKSSSSSQNDQGSNKMTRIQQKIQERNFEKAIKASEAAAKEESL 103
Query: 455 MKLVSDIKQYLILNDFPSSM 514
++Q I +D ++M
Sbjct: 104 ESSKEAMRQAEIDSDLANAM 123
>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 25.8 bits (54), Expect = 5.8
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -1
Query: 195 NSFVSLFVIFRQSTLGGNKTTQP 127
+ + L+ +F+Q+T+G N T +P
Sbjct: 22 DELLKLYALFKQATVGDNNTEKP 44
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.6
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +2
Query: 272 LKSYTTRLKED-VKSMLENFEEIIKLAKVENESQL---NRMTQIEQDTFEMQVRAANIVR 439
+K Y L V ++++ F ++ ++K L M+ E T+E VRA V
Sbjct: 1136 MKRYNVSLNAYIVNALIKGFTKVGMISKARYYFDLLECEGMSGKEPSTYENMVRAYLSVN 1195
Query: 440 AGESLMKLVSDIKQ 481
G M++V +K+
Sbjct: 1196 DGRKAMEIVEQLKR 1209
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 7.6
Identities = 27/105 (25%), Positives = 46/105 (43%)
Frame = +2
Query: 257 NKDALLKSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIV 436
N + S K +++S E+F IK ENE +++R+ Q E+D+ + V
Sbjct: 284 NIEQKANSLIMEYKNELQSAEEHFSHKIKELTSENELKISRL-QEEKDSLLKK------V 336
Query: 437 RAGESLMKLVSDIKQYLILNDFPSSMKPLPKIPNCFVQNNKSVTR 571
+ G SL K L S+++PL + N Q + + R
Sbjct: 337 QEGASLAMQRVQNKHDLEKKRLQSAIQPLQEENNSLKQQIEQLQR 381
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 161 SLHWVVTKQLNPKVTLLFVHKISNCVVQFSTHKS 60
SL W V+K ++ +L V IS ++ STH S
Sbjct: 509 SLLWSVSKPFPAEIQVLSVDDISTLILFSSTHGS 542
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,905
Number of Sequences: 5004
Number of extensions: 48530
Number of successful extensions: 192
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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