Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40610
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1025 - 23737339-23737572,23739027-23739092,23739184-23739330     48   9e-06
03_05_0952 + 29103879-29103983,29104103-29104600,29104693-291047...    31   0.85 
09_04_0287 - 16407324-16407551,16407647-16407748,16407824-164079...    30   1.5  
05_07_0063 - 27428056-27428184,27428321-27428460,27428698-274289...    30   1.5  
10_01_0181 - 2041502-2043013                                           29   2.6  

>08_02_1025 - 23737339-23737572,23739027-23739092,23739184-23739330
          Length = 148

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 27/99 (27%), Positives = 52/99 (52%)
 Frame = +2

Query: 275 KSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESL 454
           K+   +   DV S+++NF  +I +A+V +    N      Q+ F+M +R + +V + +SL
Sbjct: 24  KTLLQKADADVSSLVDNFAALINIARVNDPPVRNT-----QEAFQMDMRGSRMVHSADSL 78

Query: 455 MKLVSDIKQYLILNDFPSSMKPLPKIPNCFVQNNKSVTR 571
           +KLVS++K+  I +   S  + + +    F Q  +   R
Sbjct: 79  LKLVSELKRTAIFSGLASLTENVDRRIEIFSQQVEGTER 117


>03_05_0952 +
           29103879-29103983,29104103-29104600,29104693-29104794,
           29105552-29105898,29105967-29106153,29106242-29106417,
           29106976-29107065,29107066-29107322,29107593-29107687,
           29107801-29107920,29108111-29108230,29108410-29108508,
           29108588-29108689,29108884-29109111
          Length = 841

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +2

Query: 266 ALLKSYTTR-LKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRA 442
           A+L+ +  R +KEDV+ ML   +EII  A + N  +  +   +EQ TF+  +   + +  
Sbjct: 531 AILRPFLLRRMKEDVEHMLPRKKEIIIYANMTNHQKEIQNHLVEQ-TFDEYLHEKSEIGM 589

Query: 443 GESLMKLVSDIKQYLILN 496
              + KL+    ++ +LN
Sbjct: 590 YPPVEKLLEQCGKFQLLN 607


>09_04_0287 -
           16407324-16407551,16407647-16407748,16407824-16407922,
           16408213-16408332,16408513-16408632,16408740-16408834,
           16409109-16409365,16410134-16410309,16410401-16410587,
           16410656-16411002,16411722-16411823,16411917-16412414,
           16412520-16412624
          Length = 811

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +2

Query: 266 ALLKSYTTR-LKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRA 442
           A+L+ +  R +KEDV+ ML   +EII  A + +  +  +   +EQ TF+  +   + +  
Sbjct: 501 AILRPFLLRRMKEDVEHMLPRKKEIIIYANMTDHQKQIQNHLVEQ-TFDQYLHEKSEIGL 559

Query: 443 GESLMKLVSDIKQYLILN 496
              + KL+    ++ +LN
Sbjct: 560 YPPVEKLLEQCGKFQLLN 577


>05_07_0063 -
           27428056-27428184,27428321-27428460,27428698-27428926,
           27429231-27429281,27429411-27429636,27430230-27430300,
           27430466-27430585,27430671-27430865,27431088-27431152,
           27431232-27431322,27431607-27431707,27431767-27431817,
           27432076-27432177,27432406-27432510,27432600-27432663,
           27433023-27433151
          Length = 622

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +2

Query: 152 NVDCRNITKSDTNEFKKTPQFKQQRTNQHAAEST*NKDALLKSYTTRLKEDVKSMLENFE 331
           NVD     + +   F  TP++K      H A      + L KS +  L+  +KS +   +
Sbjct: 263 NVDMIAARRREREYFSTTPEYK------HLAHRM-GSEHLAKSLSKHLETVIKSRIPGLQ 315

Query: 332 EIIKLAKVENESQLNRM 382
            +I     E E++LNR+
Sbjct: 316 SLITKTIAELETELNRL 332


>10_01_0181 - 2041502-2043013
          Length = 503

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/87 (29%), Positives = 40/87 (45%)
 Frame = +2

Query: 287 TRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESLMKLV 466
           T +  +VKS LEN E ++   K E  S LN   +I ++ +   +   N +  G  + +  
Sbjct: 142 TIVSREVKSSLENLETVLDNLK-EFVSLLNGCERIFRNPYSTYLYIDNFM-FGRQVER-- 197

Query: 467 SDIKQYLILNDFPSSMKPLPKIPNCFV 547
             I   L+L+D P     LP I  C V
Sbjct: 198 QQIMSILMLDDHPKIPAVLPIIGGCRV 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,143,283
Number of Sequences: 37544
Number of extensions: 251754
Number of successful extensions: 631
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)