Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40609
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    70   4e-13
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    65   1e-11
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    32   0.083
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    28   1.8  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    27   2.4  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    27   3.1  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    27   3.1  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    27   4.1  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   7.2  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.2  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   7.2  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 34/75 (45%), Positives = 42/75 (56%)
 Frame = +2

Query: 476 RASNGSQCKGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYF 655
           +   G   KG P+FW    +NV  LSEM+   DE  L  L DI++   E P  F LEF F
Sbjct: 154 KQEGGDDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEF 212

Query: 656 APNEYFTNTVLTKEY 700
           A N +FTN +LTK Y
Sbjct: 213 AENPFFTNKILTKTY 227



 Score = 35.9 bits (79), Expect = 0.007
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 163 LHAEAMASLPPNVRRRIRALRTLQKEFVDIEPSFTVKYMH-SNANMKNFTSLFMK 324
           L +E ++ LP  V+RRI  LR LQK + D+E  F  +      A  K +  +F +
Sbjct: 63  LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKR 117


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +2

Query: 500 KGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK-VQMHEDPISFTLEFYFAPNEYFT 676
           KG P+FW     NV ++ EM+   DE +L+ L DI+   +  D   + LEF F  N+YFT
Sbjct: 164 KGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSNDYFT 223

Query: 677 NTVLTKEYLMKCKPDEESP 733
           N +LTK Y  K   D+ SP
Sbjct: 224 NKILTKTYYYK---DDLSP 239


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
 Frame = -2

Query: 599 LASILELVHHVLASFR*ALRHS*ICCTKSLDTLYIGIH-WRLDSLVILLFLTLSDGSI-- 429
           LAS++  V   +A F  +L +S    T  L   Y G+  + + ++ ILLF ++  G++  
Sbjct: 628 LASVMYYVAEQVAFF--SLGNSNSLATVDLSQAYTGLDSYNIFAVGILLFTSVFAGALWW 685

Query: 428 -LYRPS*LFFFSVITPWVETFIIIRFIC 348
            L++P  +   SV T W+ + I + F+C
Sbjct: 686 CLHQPKRMMDRSVKTFWIMSSISLTFLC 713


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 147 GHHKSPSCRSDGIPTPKCSSANPRLENSSEGVCRH 251
           GHHK+P CR+  +      S N R E   + V RH
Sbjct: 485 GHHKNPKCRAKKLVV---ESRNGRREYVQDAVRRH 516


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +1

Query: 115 KSGVTRNEMIAAITNRLHAEAMASLPPNVRRRIRALRTLQKEFVDIEPSFTVKYMHSNAN 294
           K  +T NE    + N +  +   S   N +R++   R  QK+F+  EP+F  +    +  
Sbjct: 620 KDALTINEFFT-LKNAVEKQDNVSFHVNKKRKVSQKREKQKKFLYDEPTFKKEASPHSDV 678

Query: 295 MKN 303
           +KN
Sbjct: 679 LKN 681


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -1

Query: 684 TVFV---KYSFGAK*-NSKVKLMGSSCICTLISCKH 589
           T+FV   KYSF +K   SK K    SC   LISC H
Sbjct: 354 TLFVSLRKYSFSSKNVQSKEKSKIMSCFTLLISCAH 389


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 468 KAIEPPMDPNVKGIQTFGTTYSGMSQC 548
           KAI  P+D  VK +QTF + Y     C
Sbjct: 207 KAIMFPVDTVVKTLQTFPSNYKSFKDC 233


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 290 AFECMYFTVKLGSMSTNSF*RVLKARIRRRTFGGRDAIASA*R 162
           A + +  T  LGS+STN+     K + R+ T    DA+A+A R
Sbjct: 246 AIQLVKSTSDLGSLSTNTSSTAQKNKSRKPTKSFSDAVAAASR 288


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 106  HLLKSGVTRNEMIAAITNRLHAEAMASLP 192
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +3

Query: 402 EEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIQT 515
           EEEL+ ++ N    + E++KD+   +P   P++  + +
Sbjct: 475 EEELSDSLSNDFGIDAEKEKDENLSKPEHHPSITSVNS 512


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 226 TLQKEFVDIEP--SFTVKYMHSNANM 297
           TLQ++F D++P  S   K MH + N+
Sbjct: 824 TLQRDFTDVDPVRSLMKKTMHGSTNI 849


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,200,171
Number of Sequences: 5004
Number of extensions: 63819
Number of successful extensions: 191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)