Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40609
(807 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 78 9e-15
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 77 1e-14
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 74 1e-13
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 71 8e-13
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 56 3e-08
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 48 7e-06
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 32 0.47
02_03_0138 - 15629421-15629440,15629521-15629752,15630115-156303... 30 2.5
04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756... 29 4.4
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 29 5.8
12_01_0109 + 853043-853426,853653-853787,853866-854138 28 7.6
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 77.8 bits (183), Expect = 9e-15
Identities = 38/82 (46%), Positives = 50/82 (60%)
Frame = +2
Query: 491 SQCKGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEY 670
+ KG PDFW + +LSE +QE DEP LK L+DIK +DP F L+F+F N +
Sbjct: 129 ADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDPKGFKLDFFFDTNPF 188
Query: 671 FTNTVLTKEYLMKCKPDEESPL 736
F N+VLTK Y M DE+ P+
Sbjct: 189 FKNSVLTKTYHM---VDEDEPI 207
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 166 HAEAMASLPPNVRRRIRALRTLQKEFVDIEPSF 264
H + + +L PNVR+R+ LR +Q + +IE F
Sbjct: 47 HTDVLEALSPNVRKRVEYLREIQGQHDEIELKF 79
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 77.4 bits (182), Expect = 1e-14
Identities = 39/79 (49%), Positives = 49/79 (62%)
Frame = +2
Query: 500 KGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 679
KG P+FW N +N +LSE +QE DE LK L+DIK +P F LEFYF N +F N
Sbjct: 129 KGVPEFWLNAMKNHEILSEEIQERDEEALKYLKDIKWYRISEPKGFKLEFYFDTNPFFKN 188
Query: 680 TVLTKEYLMKCKPDEESPL 736
+VLTK Y M DE+ P+
Sbjct: 189 SVLTKTYHM---IDEDEPI 204
Score = 34.3 bits (75), Expect = 0.12
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 166 HAEAMASLPPNVRRRIRALRTLQKEFVDIEPSF 264
H + + SL P VR+R+ LR +Q + D+E F
Sbjct: 46 HTDVLESLEPKVRKRVEVLREIQSQHDDLEAKF 78
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 74.1 bits (174), Expect = 1e-13
Identities = 40/89 (44%), Positives = 51/89 (57%)
Frame = +2
Query: 491 SQCKGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEY 670
S+ KG PDFW N +N +L+E + E DE LK L+DIK +DP F EF+F N +
Sbjct: 205 SKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFYTNPF 264
Query: 671 FTNTVLTKEYLMKCKPDEESPLEFEGPEI 757
F N VLTK Y M + DE + G EI
Sbjct: 265 FKNQVLTKTYHMIDEDDEPILEKAIGTEI 293
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 166 HAEAMASLPPNVRRRIRALRTLQKEFVDIEPSF 264
H + + SL P+VR+R+ L +Q + ++E F
Sbjct: 153 HVDVLESLAPSVRKRVDVLMEIQSQHDELEVKF 185
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 71.3 bits (167), Expect = 8e-13
Identities = 38/86 (44%), Positives = 48/86 (55%)
Frame = +2
Query: 500 KGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 679
KG PDFW +N +L+E + E DE LK L+DIK +DP F EF+F N +F N
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFDTNPFFKN 162
Query: 680 TVLTKEYLMKCKPDEESPLEFEGPEI 757
VLTK Y M + DE + G EI
Sbjct: 163 QVLTKTYHMIDEDDEPILEKAIGTEI 188
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 56.4 bits (130), Expect = 3e-08
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 500 KGYPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFT 676
K PDFW F + ML E++ E D+ I K L+ I V ED S +++ F+PN YF
Sbjct: 73 KQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDVDDSEDIKSGYSITLTFSPNPYFE 132
Query: 677 NTVLTKEY 700
+T LTK Y
Sbjct: 133 DTKLTKTY 140
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 48.4 bits (110), Expect = 7e-06
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 509 PDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNTV 685
PDFW F + +LSE++ E D+ + K L+ + V +D S +++ F+ N YF +
Sbjct: 81 PDFWLTAFLSHPLLSELLTEEDQKMFKYLESVDVDDSKDVKSGYSITLTFSENPYFEDKE 140
Query: 686 LTKEY 700
LTK Y
Sbjct: 141 LTKTY 145
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 390 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIQTFGTTYSGMS 542
DD EEEE + V I EG + ++ +A P D + F Y G S
Sbjct: 169 DDVEEEEEEQVVSRLDIFEGAKGREARAFLPDEDDEDDDVVVFDPEYDGYS 219
>02_03_0138 -
15629421-15629440,15629521-15629752,15630115-15630348,
15630486-15630709,15631225-15631509,15631549-15631690
Length = 378
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +2
Query: 617 HEDPISFTLEFYFAPNEYFTNTVLTKEY-----LMKCKPDEESPLEFEGPEIYSARM*IT 781
HED SF EF ++ T L Y L++ K D+E EFE + R+ T
Sbjct: 189 HEDETSFEEEFQIMRSKVHKQTWLDSIYKHFERLVQEKRDKELESEFEARKKLPRRLMCT 248
Query: 782 GMLVKRN 802
MLV+ N
Sbjct: 249 PMLVQAN 255
>04_04_1509 - 34074206-34074398,34074506-34074777,34075411-34075608,
34076092-34076187,34076318-34076500,34076597-34076799,
34076887-34077013,34077098-34077292,34077400-34077540,
34077669-34077812,34077876-34078040,34078776-34078976,
34079049-34079195,34079275-34079427,34079731-34079833,
34079954-34080069,34080168-34080349,34080442-34080541,
34081200-34081527,34081605-34081834,34081979-34082110,
34082787-34082859,34083274-34083338
Length = 1248
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 357 PNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDK-AIEPPMDPNVKGIQTFGTTYS 533
P++ +PW+DD ++ + V +A T+ E +D K ++ +D I +G T S
Sbjct: 898 PDEFTVAHPWKDDKSKQHIYDRVFDANTTQEEVFEDTKYLVQSAVDGYNVCIFAYGQTGS 957
Query: 534 G 536
G
Sbjct: 958 G 958
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 330 ALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGE 452
A IV + EPN + N +D+T E+ A +NAA+T +
Sbjct: 685 AAIVTASEEPNGGDSANKLKDETMEDP---ATENAAMTNAD 722
>12_01_0109 + 853043-853426,853653-853787,853866-854138
Length = 263
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 187 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 56
G+P L GD+ + L+F G+ H T VAL F Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,357,907
Number of Sequences: 37544
Number of extensions: 399270
Number of successful extensions: 1054
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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