Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40608
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    29   0.53 
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    29   0.70 
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.8  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.8  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    26   6.6  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   8.7  

>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -2

Query: 568 QSGRETLTSRRSYIVVLKEKRILGNIKLHLKLLSPTIYNINDYKNKLRGDPPLPLTLHS 392
           +S R+ L+  R+  VVL EK  LGN    L+     +Y I+ Y   +     L +T++S
Sbjct: 135 RSSRQVLSGGRAGKVVLSEKGWLGNKDTVLQADCGAVYKISWYTTYIAWASDLGITVYS 193


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 514 EKRILGNIKLHLKLLSPTIYNINDY 440
           EKR+ GN ++H+K L   +YN+  +
Sbjct: 399 EKRLNGNNRMHIKQLIKVVYNLKSF 423


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 690 VTRHVCHTGXQQLNATASMECLVNL*LTFKNPILFLFRILFKA 562
           + RH C  G  +  A A   CL N   TF+   L +  I+  +
Sbjct: 300 MARHCCEIGQSRFGARAIRACLENENATFEQQALVVASIIINS 342


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 487 LHLKLLSPTIYNINDYKNKLRGDPPLPLTLHSL 389
           LH  ++S   Y I  Y   ++GD PL   +H+L
Sbjct: 361 LHYYIMSTVTYYIPIYFQSIKGDGPLMSGVHTL 393


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 487 LHLKLLSPTIYNINDYKNKLRGDPPLPLTLHSL 389
           LH  ++S   Y I  Y   ++GD PL   +H+L
Sbjct: 361 LHYYIVSTITYYIPVYFQNIKGDGPLMSGVHTL 393


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 563  ALNKIRNRKSIGFLNVNYKFTRHSIEAVAFS 655
            ALN I N  +I F NV   FTR S+E + +S
Sbjct: 1114 ALNVIGN--AIKFTNVGEVFTRCSVEKIDYS 1142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,570
Number of Sequences: 5004
Number of extensions: 48607
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)