Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40608
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.75 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.0  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   4.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   9.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 556 ETLTSRRSYIVVLKEKRILGNIKLHLKL 473
           +T+T    Y+ + K+K IL  +KL LKL
Sbjct: 134 QTMTIPNHYLWLYKDKTILYMVKLTLKL 161


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -2

Query: 520  LKEKRILGNIKLHL--KLLSPTIYNINDYKNKLRGDPPLPLTLHSLRRQRRIEQQHFQVK 347
            L+  R+ G+  LH    +++ +  N+ +    L    P P+ + S ++ ++ +QQ  Q  
Sbjct: 931  LQTIRLSGHSVLHSAQSVVASSASNVTNVTTNLTTILP-PVKVQSQQQSQQSQQQQQQQT 989

Query: 346  LFSRQKYKSVIK 311
            + + Q  KS+++
Sbjct: 990  IVTNQAGKSILQ 1001


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 548 ERLASALNKIRNRKSI 595
           +R+ S+LN +RN KSI
Sbjct: 39  KRVYSSLNSLRNHKSI 54


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 426 GATLPSLSPSTRCDANDELSNNIFKLN 346
           GA +  L  +TRC  +D  +NN  K N
Sbjct: 571 GANVNDLIMNTRCANSDNQNNNQNKHN 597


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
 Frame = -2

Query: 454 NIND---YKNKLRGDPPLPLTL 398
           NI+D   Y  K+RG   LPLTL
Sbjct: 11  NISDELRYLEKVRGPKYLPLTL 32


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 490 KLHLKLLSPTIYNINDYKN 434
           K+   L + TI+N N+YKN
Sbjct: 313 KIISSLSNKTIHNNNNYKN 331


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 279 PLMENYPLDYFYVKYILMESTVN 211
           P M NY    FY  Y+L  S ++
Sbjct: 360 PSMANYDRGVFYKNYLLNVSFID 382


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 285 VFPLMENYPLDYFYVK 238
           +FP   NY  +YFY K
Sbjct: 131 IFPQENNYNDNYFYSK 146


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 279 PLMENYPLDYFYVKYILMESTVN 211
           P M NY    FY  Y+L  S ++
Sbjct: 450 PSMANYDRGVFYKNYLLNVSFID 472


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,044
Number of Sequences: 438
Number of extensions: 3854
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)