Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40608
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ...    30   1.9  
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ...    30   1.9  
At1g09880.1 68414.m01112 hypothetical protein                          29   2.5  
At4g07825.1 68417.m01238 expressed protein this may be a pseudog...    28   5.7  
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ...    28   5.7  
At1g28440.1 68414.m03496 leucine-rich repeat transmembrane prote...    28   5.7  
At5g10120.1 68418.m01172 ethylene insensitive 3 family protein c...    27   10.0 
At4g34440.1 68417.m04894 protein kinase family protein contains ...    27   10.0 
At2g01140.1 68415.m00023 fructose-bisphosphate aldolase, putativ...    27   10.0 

>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
           protein
          Length = 830

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 6/133 (4%)
 Frame = -2

Query: 724 HHGPRRTDGTYGHTARL--PH----GTPTTKRHRFNGMPCKLIINI*KSYTLSISDFVQS 563
           H  P    G   ++ R   PH    GT +  R+R+   P  +       YT  +S    S
Sbjct: 462 HSLPEHITGGISNSMRFIAPHSSGFGTSSDHRYRWGSPPQHMNY---PGYT-GVSSSSSS 517

Query: 562 GRETLTSRRSYIVVLKEKRILGNIKLHLKLLSPTIYNINDYKNKLRGDPPLPLTLHSLRR 383
                T R  +    ++  +LG  + H+   +P+  + N   N   G P +PL    +  
Sbjct: 518 TERPFTVRHGFPFAERQASLLGKYQHHVGS-APSSIHFNTQMNCYTGSPEIPLGFSDMGI 576

Query: 382 QRRIEQQHFQVKL 344
            R     H +  L
Sbjct: 577 NRNYNSAHGKANL 589


>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
           protein
          Length = 843

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 6/133 (4%)
 Frame = -2

Query: 724 HHGPRRTDGTYGHTARL--PH----GTPTTKRHRFNGMPCKLIINI*KSYTLSISDFVQS 563
           H  P    G   ++ R   PH    GT +  R+R+   P  +       YT  +S    S
Sbjct: 475 HSLPEHITGGISNSMRFIAPHSSGFGTSSDHRYRWGSPPQHMNY---PGYT-GVSSSSSS 530

Query: 562 GRETLTSRRSYIVVLKEKRILGNIKLHLKLLSPTIYNINDYKNKLRGDPPLPLTLHSLRR 383
                T R  +    ++  +LG  + H+   +P+  + N   N   G P +PL    +  
Sbjct: 531 TERPFTVRHGFPFAERQASLLGKYQHHVGS-APSSIHFNTQMNCYTGSPEIPLGFSDMGI 589

Query: 382 QRRIEQQHFQVKL 344
            R     H +  L
Sbjct: 590 NRNYNSAHGKANL 602


>At1g09880.1 68414.m01112 hypothetical protein
          Length = 631

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 517 KEKRILGNIKLHLKLLSPTIYNINDYKNKLRGDPPL 410
           K K + GN KL + L +  +  +    N L  DPPL
Sbjct: 523 KMKNVTGNFKLRIALATSNVAELQVRVNDLSADPPL 558


>At4g07825.1 68417.m01238 expressed protein this may be a
           pseudogene.  A  long ORF is frameshifted.
          Length = 247

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = -2

Query: 592 TLSISDFVQSGRETLTSRRSYIVVLKEKRILGNIKLHL-------KLLSPTIYNINDYKN 434
           T++ + F  +GR     RR  +   +  R L    LHL        LLSP  + +  Y++
Sbjct: 28  TITFTMFSDAGRVFARRRRDIVCFSQSFRNLSRFLLHLFIIFYHPSLLSPCFHGVPLYRD 87

Query: 433 KL-RGDPPLPLTL 398
            + RG P  P++L
Sbjct: 88  NINRGFPANPVSL 100


>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
           transcription factor jumonji (jmj) family protein
           contains Pfam domains PF02375: jmjN domain, PF02373:
           jmjC domain and PF00096: Zinc finger, C2H2 type
          Length = 1354

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 496 FPIFVSPLVLLYNFCVT*ASRVRFEQNPK*KEYRI 600
           +P  VS L LLY+F +   SRV    NPK +  R+
Sbjct: 373 YPPMVSHLQLLYDFVLALGSRVPTSINPKPRSSRL 407


>At1g28440.1 68414.m03496 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GI:4105699
           from [Arabidopsis thaliana]
          Length = 996

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -2

Query: 520 LKEKRILGNIKLHLKLLSPTIYNINDYKNKLRGDPPLPLTLHSLRRQRRIEQQHF 356
           L E  + G +   + L SP +Y I  + N+L G  P  L L+S  R   + +  F
Sbjct: 307 LYENNLEGELPASIAL-SPNLYEIRIFGNRLTGGLPKDLGLNSPLRWLDVSENEF 360


>At5g10120.1 68418.m01172 ethylene insensitive 3 family protein
           contains Pfam profile: PF04873 ethylene insensitive 3
          Length = 471

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 581 FGFCSKRTRDAHVTQKLYSSTKGETNIGKY 492
           FGF  K +R  H  Q LY S +  +  G+Y
Sbjct: 323 FGFGDKNSRTGHEIQCLYGSNQEPSQSGEY 352


>At4g34440.1 68417.m04894 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 670

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 734 RGEPPRPAANGWHLRSHGTSATRDXNN*TPPLQWN 630
           R  PP P AN    R++G +  RD +  +PP   N
Sbjct: 117 RPTPPSPGANDDRNRTNGGNNNRDGSTPSPPSSGN 151


>At2g01140.1 68415.m00023 fructose-bisphosphate aldolase, putative
           similar to plastidic aldolase NPALDP1 from Nicotiana
           paniculata [GI:4827251]; contains Pfam profile PF00274
           Fructose-bisphosphate aldolase class-I
          Length = 391

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 624 QGIPLKRWRLVVGVPCG 674
           QG    +WR VV VPCG
Sbjct: 172 QGARFAKWRTVVSVPCG 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,396,132
Number of Sequences: 28952
Number of extensions: 238212
Number of successful extensions: 515
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)