Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40607
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 167 1e-42
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 157 1e-39
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 82 6e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 55 8e-09
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.4
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.5
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.9
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 5.9
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 5.9
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.8
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 167 bits (406), Expect = 1e-42
Identities = 94/207 (45%), Positives = 117/207 (56%), Gaps = 3/207 (1%)
Frame = +2
Query: 2 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 181
+YGKKS L+F++YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDI
Sbjct: 164 EYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDI 223
Query: 182 ERPTYTNLNRLIGQIVSSITASLRSTAL*MWTSPSSRLTWCLTPVSTSHWSRTRQSSL-P 358
ERPTY NLNRLI Q+VSSITASLR + L P H+ S +
Sbjct: 224 ERPTYENLNRLIAQVVSSITASLRFAG--SLNVDLNEFQTNLVPYPRIHFPLVTYSPIVS 281
Query: 359 RRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTS-YPR-M*RGHRYHQN 532
+ S + T+ P ++A C PR + ++
Sbjct: 282 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKS 341
Query: 533 QAYYPIRDWCPTGFKVGINYQPPPWCP 613
+ DWCPTGFK+GI Y+PP P
Sbjct: 342 RRTIQFVDWCPTGFKIGICYEPPQHVP 368
Score = 159 bits (387), Expect = 3e-40
Identities = 79/134 (58%), Positives = 90/134 (67%), Gaps = 1/134 (0%)
Frame = +1
Query: 259 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 438
G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKC
Sbjct: 250 GSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKC 309
Query: 439 DPRHGKYMACCMLYRGDVVPKDV-TRXXXXXXXXXXXXXXXXXXRFQGRYQLPATTVVPG 615
DPR G+YMA C+LYRGDV+P+DV F+ VPG
Sbjct: 310 DPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPG 369
Query: 616 ATWAKVQRAVCMLS 657
+ AKV RAVCMLS
Sbjct: 370 SGIAKVNRAVCMLS 383
Score = 35.9 bits (79), Expect = 0.006
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +3
Query: 510 AAIATIKTKRTIQFV----TGVQPVSRSVSTTSHHRGARSDLGQGSTCRLHVVNTTAIAE 677
AA+ +IK++RTIQFV TG + + H G+ + C L NTT+IAE
Sbjct: 334 AAVTSIKSRRTIQFVDWCPTGFK-IGICYEPPQHVPGSGIAKVNRAVCMLS--NTTSIAE 390
Query: 678 AWAR 689
AW+R
Sbjct: 391 AWSR 394
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 157 bits (382), Expect = 1e-39
Identities = 80/136 (58%), Positives = 92/136 (67%), Gaps = 2/136 (1%)
Frame = +1
Query: 256 DGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 435
+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP NQMVK
Sbjct: 245 EGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVK 304
Query: 436 CDPRHGKYMACCMLYRGDVVPKDV-TRXXXXXXXXXXXXXXXXXXRFQ-GRYQLPATTVV 609
CDPR G+YMA C+LYRGDV+P+DV F+ G P +
Sbjct: 305 CDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQH-I 363
Query: 610 PGATWAKVQRAVCMLS 657
G+ AKV RAVCMLS
Sbjct: 364 EGSEIAKVDRAVCMLS 379
Score = 148 bits (359), Expect = 7e-37
Identities = 66/84 (78%), Positives = 77/84 (91%)
Frame = +2
Query: 2 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 181
+Y KKSKL+F++YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLDI
Sbjct: 160 EYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDI 219
Query: 182 ERPTYTNLNRLIGQIVSSITASLR 253
ERP+Y NLNRLI Q+VSSITASLR
Sbjct: 220 ERPSYENLNRLIAQVVSSITASLR 243
Score = 38.7 bits (86), Expect = 8e-04
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 510 AAIATIKTKRTIQFV----TGVQPVSRSVSTTSHHRGARSDLGQGSTCRLHVVNTTAIAE 677
AA+ TIK KRTIQFV TG + + H G+ + C L NTT+IAE
Sbjct: 330 AAVTTIKAKRTIQFVDWCPTGFK-IGICDRPPQHIEGSEIAKVDRAVCMLS--NTTSIAE 386
Query: 678 AWAR 689
AW+R
Sbjct: 387 AWSR 390
Score = 35.1 bits (77), Expect = 0.010
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 554 DWCPTGFKVGINYQPP 601
DWCPTGFK+GI +PP
Sbjct: 345 DWCPTGFKIGICDRPP 360
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 82.2 bits (194), Expect = 6e-17
Identities = 36/87 (41%), Positives = 53/87 (60%)
Frame = +1
Query: 247 FEIDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 426
F G LN DL + N+VP+PR+HF +V +AP+ + + + +SV E+T F+ N
Sbjct: 240 FRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNM 299
Query: 427 MVKCDPRHGKYMACCMLYRGDVVPKDV 507
MV DPRHG+Y+ L+RG V K+V
Sbjct: 300 MVAADPRHGRYLTVAALFRGKVSMKEV 326
Score = 75.8 bits (178), Expect = 6e-15
Identities = 33/84 (39%), Positives = 52/84 (61%)
Frame = +2
Query: 2 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 181
+Y + F++ PAP+ S VVEPYN+ L+ H +E+SD F +DNEA+ I L I
Sbjct: 158 EYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKI 217
Query: 182 ERPTYTNLNRLIGQIVSSITASLR 253
+ P+Y +LN L+ +++ +T S R
Sbjct: 218 KSPSYDDLNHLVSAVMAGVTTSFR 241
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 55.2 bits (127), Expect = 8e-09
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +2
Query: 5 YGKKSKLEFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 181
Y KK ++++P Q VS VV+PYNS+L ++D ++DN A+ I L
Sbjct: 161 YPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHT 220
Query: 182 ERPTYTNLNRLIGQIVSSITASLR 253
+ PT+ N+L+ ++S+ T +LR
Sbjct: 221 QNPTFHQQNQLVSTVMSASTTTLR 244
Score = 44.8 bits (101), Expect = 1e-05
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Frame = +1
Query: 187 PNLHQPESSHRTDCLLDHCFFEIDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---A 357
P HQ T G +N DL +L+P PR HF L +Y P +
Sbjct: 223 PTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVE 282
Query: 358 EKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDV 507
E + +V ++ P NQMV +P + +++ + +G+ P DV
Sbjct: 283 EAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADV 333
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 281 PSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 427
P+++ P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = -2
Query: 504 ILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGKLFMVGLLGRDDWRVRDQW 325
+LGY ++ A++V+A + V HL+ G D + K G D R Q+
Sbjct: 413 LLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDMLVDRVQY 465
Query: 324 EVDTGVR 304
E++ G++
Sbjct: 466 ELEAGLQ 472
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 344 QSSLPRRPTMNSFPSPRSQTHASSPPTR 427
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +2
Query: 275 TSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPV 448
TS S L+ + +++ T S+ P PT+ S +P + T+ ++ + +TPV
Sbjct: 381 TSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPV 440
Query: 449 MASTWLAVCCTVVTSYP 499
++ CT TS P
Sbjct: 441 TSTPLATTNCTTSTSVP 457
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 278 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSP 418
SPS LT L S++ S + + + R+ T +S SP+ Q+ S+P
Sbjct: 619 SPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTP 664
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 499 WVRRHHGTAYSKPCTCHDGG 440
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +2
Query: 305 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 457
LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 223 DCLLDHCFFEIDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 354
D LD C EI + N L + +T+ + RIH +T PV S
Sbjct: 195 DIKLDDCGLEISASKNEYLEKIKTHYKTWLRIH-TFLTLFPVPS 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,702
Number of Sequences: 5004
Number of extensions: 62975
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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