Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40606
(261 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 85 2e-18
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 79 1e-16
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 26 0.72
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 0.95
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 1.3
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 1.7
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 1.7
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 2.2
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 24 2.9
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 24 3.8
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 24 3.8
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 23 5.1
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 23 5.1
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 23 6.7
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 84.6 bits (200), Expect = 2e-18
Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Frame = +2
Query: 2 IHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEER 175
I +RS++KPF+KVVNYNHLMPTRY ++ K +A K+P +R R + FEE+
Sbjct: 62 IARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEK 121
Query: 176 YKSGKNKWFFQKLRF 220
Y+SGK+ WFF LRF
Sbjct: 122 YQSGKSAWFFTPLRF 136
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 78.6 bits (185), Expect = 1e-16
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Frame = +2
Query: 2 IHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEER 175
I KRS++KPF+KV+NYNHLMPTRY ++ K + +P++R + + FEE+
Sbjct: 62 IAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEK 121
Query: 176 YKSGKNKWFFQKLRF 220
Y++GK+ WFF LRF
Sbjct: 122 YQTGKSAWFFTPLRF 136
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 26.2 bits (55), Expect = 0.72
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 2 IHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 124
I R K P K+VNYNH + + +F K D+ DP
Sbjct: 32 IFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 0.95
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 121 VFQVFCAEFFKAEVNCITCWHQVIIVYNLHERLY 20
V+QVFC F A+ I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 1.3
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 83 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 217
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 1.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 77 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 193
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 1.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 77 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 175
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 2.2
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +2
Query: 20 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 157
+ PF K Y H + T + S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 24.2 bits (50), Expect = 2.9
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -3
Query: 103 AEFFKAEVNCITCWHQVIIVYNLHE 29
A FF + +C++ + ++ YN+HE
Sbjct: 69 APFFTKQNSCLSRFRELAQTYNIHE 93
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 23.8 bits (49), Expect = 3.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 106 CAEFFKAEVNCITCWHQVIIVYNLHERLY 20
CA+F E N + WH YNL R Y
Sbjct: 772 CAKFSLKETNKTSFWHS---SYNLFNRQY 797
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 23.8 bits (49), Expect = 3.8
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = +2
Query: 89 FEKFSAKDLKDPAKRKKLR----FNTRVRFEE 172
F K A DPA RKKLR R+RF+E
Sbjct: 96 FRKALALAPSDPAARKKLRECEQLVKRIRFQE 127
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 125 AKRKKLRFNTRVRFEERYKSGKNKWFFQKL 214
AK +L N+R F+ R G N+ F ++L
Sbjct: 208 AKAMQLTLNSRPNFDLRRLIGSNEQFLKEL 237
>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 624
Score = 23.4 bits (48), Expect = 5.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 74 YNVLASSDYSLQPSRKALS 18
YNV SDY L+P+ +S
Sbjct: 35 YNVTCPSDYMLRPASDGIS 53
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 122 PAKRKKLRFNTRVRFEERYKSGKNK 196
P K K+LR N+ FE+ ++ K+K
Sbjct: 131 PVKSKQLRKNSVTEFEKPIETKKSK 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 951,897
Number of Sequences: 5004
Number of extensions: 15669
Number of successful extensions: 58
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -