Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40606
         (261 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   3.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   3.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   3.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   3.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   4.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   5.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    19   7.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    19   7.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    19   7.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   7.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 35  KVVNYNHLMPTRYTVDFSFEKFSAKDLKDPA 127
           K++ YN    ++Y +  S  +  +  +KDPA
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDPA 417


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 35  KVVNYNHLMPTRYTVDFSFEKFSAKDLKDPA 127
           K++ YN    ++Y +  S  +  +  +KDPA
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDPA 417


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 32  VKVVNYNHLMPTRYTV 79
           V V+N++H  P RY +
Sbjct: 344 VLVLNFHHRTPDRYVM 359


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 32  VKVVNYNHLMPTRYTV 79
           V V+N++H  P RY +
Sbjct: 344 VLVLNFHHRTPDRYVM 359


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 128 LQGLSGLLR*IFQS*SQLYNVLASSDYSL 42
           L G+ G+L  IF +        AS DYSL
Sbjct: 334 LHGMPGILGGIFGALMAALATEASYDYSL 362


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 186 PLLYLSSKRTRVL 148
           P+L LS  RTR+L
Sbjct: 279 PMLVLSGPRTRLL 291


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 186 PLLYLSSKRTRVL 148
           P+L LS  RTR+L
Sbjct: 279 PMLVLSGPRTRLL 291


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 252 VTFIFF*NYT*NLSFWKNHLF 190
           + F FF     NL++W  +LF
Sbjct: 425 IVFAFF-----NLAYWSTYLF 440


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 252 VTFIFF*NYT*NLSFWKNHLF 190
           + F FF     NL++W  +LF
Sbjct: 425 IVFAFF-----NLAYWSTYLF 440


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 172 LFKTYSRVETQLLTF 128
           +FK  S++E + +TF
Sbjct: 415 IFKNMSQIEREAITF 429


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 172 LFKTYSRVETQLLTF 128
           +FK  S++E + +TF
Sbjct: 415 IFKNMSQIEREAITF 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,142
Number of Sequences: 438
Number of extensions: 947
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)