Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40605
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    38   0.001
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    34   0.017
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    28   1.1  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    28   1.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    28   1.5  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   1.9  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    27   3.4  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   4.5  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   5.9  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 21/71 (29%), Positives = 41/71 (57%)
 Frame = +3

Query: 261 QARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTF 440
           +A+V Q+ S+++SEL  A    + P +    +++Q  + A++ +       D  L ++T+
Sbjct: 90  KAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTY 149

Query: 441 LVTERITLADV 473
           LV  R+TLAD+
Sbjct: 150 LVGSRLTLADI 160



 Score = 31.9 bits (69), Expect = 0.090
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 115 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN 231
           N   D   KFP  K+P F   DG   L+E+ AIA+Y+A+
Sbjct: 38  NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLAS 75


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 21/83 (25%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
 Frame = +3

Query: 261 QARVWQWASWSDSELL-PASCA-WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTR 434
           +A + +W  + + +++ P +   WV  + G + + ++  + + +  + +LK+ +  +  R
Sbjct: 93  EAEMLKWMCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDR 152

Query: 435 TFLVTERITLADVIVFSTLLHAF 503
           T+LV +R TLAD + F +LL  F
Sbjct: 153 TYLVGDRFTLAD-LFFGSLLRIF 174



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 121 SEDFLKKFPAGKVPAFESADGKVLLTESNAIAYY 222
           S D   KFP  K+P F  ADG   L+E  AI  Y
Sbjct: 40  SADLAAKFPLQKLPVFIGADG-FELSEVIAIVKY 72


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 388 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 480
           TY PP  Y  D+FS APS+   +     S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 536 LINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYDPKKYQELAGAQNQKEGKK 691
           L NV RWF  + HQ  V     S+++  A    +  K Q  +  +  K+ KK
Sbjct: 170 LNNVCRWFDFIQHQESVMEAANSMSMKLANIDLNAPKIQRPSVIKKDKKEKK 221


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +1

Query: 430 HAPSLLPRESHLPMSLSSVHCCM-LSSSARPER----PFVADKRSALVPDRRPP 576
           H PS  PRE ++  SL  V   + LS    P+R     F   KR A     RPP
Sbjct: 391 HIPSTTPRERNVETSLHKVVSSLDLSEEISPDRATPTSFTERKRFAFDTRNRPP 444


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 541 YQRRTDARV*HCWKACSSVLKTMTSASVILSVTRKVRVRRCPSSTFKAASRS-DFARSTF 365
           +QRR  A +  CWK  + +L+  T A    S   K+  R    S F+ A RS + A+ST 
Sbjct: 122 FQRRYYAEIISCWKVLAFLLQACTDAD---SKWHKMATRLI-VSIFQTAQRSGENAQSTT 177

Query: 364 CLLNCM 347
             + C+
Sbjct: 178 PSIFCV 183


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 398 RLKSTGRTSSHTHLPCYRENHTCRCHCLQYTAACFPAVLDPSVRSSLIN-VQR 553
           RLKST  TS  T+   +  +   RC  ++   A  P  +   + S+  N VQR
Sbjct: 15  RLKSTSATSPITYKALHANSPLPRCRIIEPPRATVPEAVSNIIMSTPFNRVQR 67


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 191 STFPSALSNAGTFPAGNFFKKSSDL 117
           +TFP A +  GTFP G  F   S L
Sbjct: 52  ATFPWAQAPVGTFPIGQLFDPVSGL 76


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 280 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 387
           GH  L  + C  P++GSS  L+  +C   N R+  V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,088
Number of Sequences: 5004
Number of extensions: 63612
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)