Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40604
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 124 9e-30
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 119 5e-28
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 31 0.21
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 30 0.28
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 28 1.1
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p... 27 2.6
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 3.5
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 26 4.6
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 26 4.6
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.1
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 6.1
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 25 8.0
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 124 bits (300), Expect = 9e-30
Identities = 60/84 (71%), Positives = 68/84 (80%)
Frame = +1
Query: 1 AKLALGISLPVIKNSVTGVTTACFEPSLDYCVVKIPRWDLAKFNKVSTKIGSSMKSVGEV 180
AKL L I L +KNSVT VT ACFEPSLDY VVKIPRWDL KF +VST++ S+MKSVGEV
Sbjct: 786 AKLGLNIPLNEVKNSVTKVTCACFEPSLDYVVVKIPRWDLKKFTRVSTQLSSAMKSVGEV 845
Query: 181 MSIGRTFEEAFQKALRMVDENVNG 252
MSIGRTFEEA QKA+R +D + G
Sbjct: 846 MSIGRTFEEAIQKAIRAIDYSNTG 869
Score = 80.2 bits (189), Expect = 3e-16
Identities = 39/65 (60%), Positives = 48/65 (73%)
Frame = +2
Query: 509 IASAIKSTEVAIRKLREEFKITPFVKQIDTVAAEWPATTNYLYLTYNGAHMTLEFPGEFV 688
IA+ + STE+A+R++R E I PFVKQIDTVAAE+PA TNYLY TYN + F + V
Sbjct: 957 IAAFMNSTELAVRRIRTEAGIRPFVKQIDTVAAEFPAFTNYLYTTYNAVEHDIHFNDKGV 1016
Query: 689 MVLGS 703
MVLGS
Sbjct: 1017 MVLGS 1021
Score = 78.2 bits (184), Expect = 1e-15
Identities = 32/75 (42%), Positives = 55/75 (73%)
Frame = +3
Query: 279 ENELKEPTDKRMFVLAAALKNGFSVEKLYELTKIDKWFLEKFKNIIDYYKTLEKLDSGTI 458
+ EL+ P+D+R+F +A A+ +G+SV++++ELT+IDKWFLEK +I + + K D ++
Sbjct: 880 DTELQTPSDQRLFAIANAMASGYSVDRIWELTRIDKWFLEKLMGLIRTSQLISKHDISSL 939
Query: 459 TSDILKQAKKMGFSD 503
+LK AK++GF+D
Sbjct: 940 PISLLKTAKQLGFAD 954
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 85 DYCVVKIPRWDLAKFNKVSTKIGSSMKSVGEVMSIGRTFEEAFQKAL 225
DY VK+P++ ++ + +G M S GEV G EA+ KA+
Sbjct: 1339 DYVAVKVPQFSFSRLSGADPVLGVEMASTGEVACFGHNKFEAYLKAM 1385
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 119 bits (286), Expect = 5e-28
Identities = 57/86 (66%), Positives = 69/86 (80%)
Frame = +1
Query: 1 AKLALGISLPVIKNSVTGVTTACFEPSLDYCVVKIPRWDLAKFNKVSTKIGSSMKSVGEV 180
AK+ALG +LP + N+VT TTA FEPSLDY V KIPRWDL+KF V+ +IGSSMKSVGEV
Sbjct: 400 AKIALGHTLPELPNAVTKTTTANFEPSLDYVVTKIPRWDLSKFQYVNREIGSSMKSVGEV 459
Query: 181 MSIGRTFEEAFQKALRMVDENVNGLI 258
M++GRTFEE+ QKALR VD + G +
Sbjct: 460 MAVGRTFEESLQKALRQVDPSFLGFM 485
Score = 77.0 bits (181), Expect = 2e-15
Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Frame = +3
Query: 279 ENELKEPTDKRMF-VLAAALKNGFSVEKLYELTKIDKWFLEKFKNIIDYYKTLEKLDS-G 452
+N L PTD+R F V+ A L G+S++K+++LTKIDKWFL K N+ YK LE++ S
Sbjct: 493 DNALSVPTDRRFFAVVEAMLNQGYSIDKIHDLTKIDKWFLSKLANMAKVYKELEEIGSLY 552
Query: 453 TITSDILKQAKKMGFSD 503
+ +I+ +AKK GFSD
Sbjct: 553 GLNKEIMLRAKKTGFSD 569
Score = 62.1 bits (144), Expect = 8e-11
Identities = 28/65 (43%), Positives = 44/65 (67%)
Frame = +2
Query: 509 IASAIKSTEVAIRKLREEFKITPFVKQIDTVAAEWPATTNYLYLTYNGAHMTLEFPGEFV 688
I+ + ++E+ +R R+ + P+VK+IDT+AAE+PA TNYLY +YN + ++F
Sbjct: 572 ISKLVGASELDVRARRKRLDVHPWVKKIDTLAAEFPAHTNYLYTSYNASSHDIDFNEHGT 631
Query: 689 MVLGS 703
MVLGS
Sbjct: 632 MVLGS 636
Score = 35.5 bits (78), Expect = 0.008
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 85 DYCVVKIPRWDLAKFNKVSTKIGSSMKSVGEVMSIGRTFEEAFQKALR 228
DY VK+P++ + +G M S GEV G+ +EA+ AL+
Sbjct: 962 DYVCVKVPQFSWTRLAGADPYLGVEMSSTGEVACFGKDVKEAYWAALQ 1009
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Frame = -3
Query: 264 CSDQTIYILVNHPQSFLECFFE----SPADRHDFPNTFHR-ASNFRTHFVKF 124
C DQ IL NH + C E D H P+ FH+ + + H VKF
Sbjct: 248 CIDQVEQILTNHHCPVVACIIEPIQSEGGDNHASPDFFHKLQATLKKHDVKF 299
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 30.3 bits (65), Expect = 0.28
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 542 IRKLREEFKITPFVKQIDTVAAEWPA 619
+RKL E ++ PF K +D+ + +WPA
Sbjct: 46 VRKLMLERRLMPFYKGLDSYSKDWPA 71
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -1
Query: 260 RIKPFTFSSTIRKAFWNASSKVLPIDMTSPTLFIELPIFVLTLLNLARSHLG 105
R+KPF +S + + NAS+K D+TSP + +P V N A S +G
Sbjct: 382 RLKPFGHTSVLSLSVPNASNKHENGDLTSP---LGVPSMVSASTNAAPSPVG 430
>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 27.1 bits (57), Expect = 2.6
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -3
Query: 291 LTHFRLLF*CSDQTIYILVNHPQSFLECFFESPADRHDF--PNTFHRASNFRTHFVKFGE 118
LTHF L+ +D IY+ N+ L E + D H F + FV E
Sbjct: 58 LTHFPLIDGHNDLPIYLRENYDNRLLNISLEHLPGQTDIFRLRQGHVGGQFWSVFV---E 114
Query: 117 VPSWDFNNTVVQTWFKTG 64
PS D N+++ +W +TG
Sbjct: 115 CPSLDSNSSL--SWNRTG 130
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 118 LAKFNKVSTKIGSSMKSVGEVMSIGRTFEEAFQKALRMVDENVNGLIRTSK 270
L +FN ++ S+ + + E+M I T +E +K V +N N TSK
Sbjct: 1445 LEEFNSTKEELSSTQRKLSEIMDILNTTKEELEK----VRQNSNKSEGTSK 1491
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 4.6
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -1
Query: 263 VRIKPFTFSSTIRKAFWNASSKVLPIDMTSPTLFIELPIFVLTLLNLARSHLGILTTQ*S 84
+++ P ++ I + WN S I M + + +P F LT + + +T
Sbjct: 95 LQVNPTEYAMMITEPSWNPQSVRQQI-MEAAFEQLHVPAFYLTKQAVCVAFANSKSTALI 153
Query: 83 -KLGSKQAVVTPVTEFLITGKDI 18
+GS A VTPV + LI K I
Sbjct: 154 VDIGSDNASVTPVVDGLIIRKGI 176
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 162 EKCWGSHVYRQDFRRSIPKSF 224
EK WG+ +Y+ F S P+SF
Sbjct: 271 EKEWGNDIYKVRFPESPPRSF 291
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -2
Query: 601 NCIYLFNKWCYFEFFS*FTDRYFSTLYCRSN---CLSENPIFLAC 476
+C+ LF KW Y +F + + + RSN SE+ I+ C
Sbjct: 176 HCLQLFFKWQYAQFLFIHRESFLFEYFHRSNDNMYCSEHLIYALC 220
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = -1
Query: 248 FTFSSTIRKAFWNASSKVLPIDMTSPTLFIELPIFVLTLLNLARSH 111
F R +W++S+K LP+ + +L ++ VL + H
Sbjct: 448 FVLMDPSRMFYWDSSAKGLPLTLDDSSLILDTTFRVLAITGEGLPH 493
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +3
Query: 261 NIKKVNENELKEPTDKRMFVLAAALKNGFSVE 356
NI K+N++ + + R+F+ + L++G VE
Sbjct: 35 NINKLNDSSTLKDSSSRIFINSQVLRDGRPVE 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,784
Number of Sequences: 5004
Number of extensions: 66037
Number of successful extensions: 219
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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