Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40604
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705     85   5e-17
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386...    31   1.2  
06_03_0592 + 22585546-22588573,22588680-22589032                       31   1.2  
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422...    29   4.8  
10_02_0068 + 4888273-4889266,4889375-4889397                           28   8.4  
03_05_0807 + 27849637-27849823,27850002-27850294,27850736-278509...    28   8.4  

>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
          Length = 1172

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 41/84 (48%), Positives = 56/84 (66%)
 Frame = +1

Query: 1   AKLALGISLPVIKNSVTGVTTACFEPSLDYCVVKIPRWDLAKFNKVSTKIGSSMKSVGEV 180
           AKL++G +L  I N +T  T A FEPS+DY V KIPR+   KF      + + MKSVGE 
Sbjct: 395 AKLSVGYTLDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSEPVLTTQMKSVGEA 454

Query: 181 MSIGRTFEEAFQKALRMVDENVNG 252
           M++GRTF+E+FQKA+R ++    G
Sbjct: 455 MALGRTFQESFQKAVRSLETGFAG 478



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
 Frame = +3

Query: 204 RSIPKSFAD-G*RECKWFDPNIKKVNENELKEPTDKRMFVLAAALKNGFSVEKLYELTKI 380
           RS+   FA  G    K  D + +K+  + L+ P   R+  + AA K G  ++ ++E++ I
Sbjct: 470 RSLETGFAGWGCAPIKELDWDWEKLKYS-LRVPNPDRIHAIYAAFKKGMRIQDIHEISFI 528

Query: 381 DKWFLEKFKNIIDYYKTLEKLDSGTITSDILKQAKKMGFSD 503
           DKWFL + K ++D  + L       ++ D   Q K+ GFSD
Sbjct: 529 DKWFLTELKELVDVEQFLISRGLDQLSKDDFYQVKRRGFSD 569



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 22/64 (34%), Positives = 36/64 (56%)
 Frame = +2

Query: 509 IASAIKSTEVAIRKLREEFKITPFVKQIDTVAAEWPATTNYLYLTYNGAHMTLEFPGEFV 688
           IA A  S+E  +R  R   ++ P  K++DT AAE+ A T Y+Y +Y     ++    + V
Sbjct: 572 IAFATSSSETDVRLRRLALEVAPTYKRVDTCAAEFEANTPYMYSSYEYECESVPTNKKKV 631

Query: 689 MVLG 700
           ++LG
Sbjct: 632 LILG 635


>12_01_1059 -
           10934937-10935446,10938224-10938271,10938383-10938619,
           10938711-10938747,10941018-10941286
          Length = 366

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
 Frame = +3

Query: 171 WGSHVYRQDFRRSIPKSFADG*RECKWFDPNIKKVNENELKEPTDKRMFVLAAALKNGFS 350
           W   + R +  R     F    R   +F+P+ K  +  E   PT  RM  +     N   
Sbjct: 260 WRESLDRIEPSRKSVDCFEPSRRSVDFFEPSRKSTDRREKSRPTRDRMRGVEHRYSN--- 316

Query: 351 VEKLYELTKIDKWFLEKFKNIIDYY----KTLEKLDSGTITSDIL 473
           VEK  +L K     +EK +  ID +    K +E+LD G  + D L
Sbjct: 317 VEKTDKL-KFSFDHMEKSRRSIDIFERPKKNIEQLDCGRKSVDRL 360


>06_03_0592 + 22585546-22588573,22588680-22589032
          Length = 1126

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -2

Query: 418 SIMFLNFSKNHL--SILVNSYNFSTLNPFFKAAANTNIRLSVGSFNSFSFTFLMFGSNHL 245
           S++ L  SKN+L  SI  +  +  TL     +  N +  +    FN  S TFL  G+N L
Sbjct: 316 SLLELRLSKNNLVGSIPESLGHIRTLEILTMSVNNLSGLVPPSLFNISSLTFLAMGNNSL 375

Query: 244 HSRQPS 227
             R PS
Sbjct: 376 VGRLPS 381


>11_01_0533 +
           4214900-4215162,4215986-4219043,4219613-4221539,
           4221561-4222094,4222388-4222842,4223073-4223189,
           4223319-4223477
          Length = 2170

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 92  VLLKSQDGTSPNLTK*VRKLEAL*KVLGKSCLSAGLSKKHSKK-LCGWLT 238
           VLLKS D    NL    R LEAL  + G +CLS  L+  ++KK L G +T
Sbjct: 459 VLLKSYDS---NLVL-DRILEALASLYGNACLSGRLNHSNAKKVLVGLIT 504


>10_02_0068 + 4888273-4889266,4889375-4889397
          Length = 338

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -2

Query: 403 NFSKNHLSILVNSYNFSTLNPFFKAAANTNIRLSVGSFNSFSFTFLMFGSNH 248
           N S + LSI   S NFST    F  +A  N+ L VG         +M G+N+
Sbjct: 139 NESYHELSIFTQSLNFSTT---FLFSATRNVLLGVGQSVRARIDGVMSGTNY 187


>03_05_0807 +
           27849637-27849823,27850002-27850294,27850736-27850973,
           27851075-27851410,27851496-27851581,27851678-27851785,
           27851878-27852185,27852265-27852528,27852610-27853381
          Length = 863

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
 Frame = -3

Query: 237 VNHPQSFLECFFESPADRHDFPNTF----HRASNFRTHFVKFGEVPSWDFNNTVVQTWFK 70
           V+  +S L   F    D+H  P       H ++ F    +   +VP  D    V  +W  
Sbjct: 86  VSQGESKLTVRFNWEMDKHGVPGAIIIKNHHSTKFFLKTITLHDVPGCDTIVFVANSWIY 145

Query: 69  TGCGYSSNRIFDNRQGYSES 10
               Y  NRIF     Y  S
Sbjct: 146 PVGKYHYNRIFFANNSYLPS 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,960,810
Number of Sequences: 37544
Number of extensions: 357975
Number of successful extensions: 868
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)