Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40600
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3... 34 0.018
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 2.7
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 3.6
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 3.6
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 3.6
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 4.7
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 4.7
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 6.3
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 26 6.3
>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
3|||Manual
Length = 227
Score = 34.3 bits (75), Expect = 0.018
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
Frame = +2
Query: 554 KAHFGFVYGLSMMSVILMYFLLSLMS-------HTEGVLLFLVLPVYWVIVCF 691
++HFG++YG++++ + ++F+L LMS T VL + +LP+ V++ F
Sbjct: 114 RSHFGYIYGIALLGSLSLHFVLRLMSAKNLFFTRTVSVLGYSLLPL--VVIAF 164
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 667 SVLGYCMLPMVVLA 708
SVLGY +LP+VV+A
Sbjct: 150 SVLGYSLLPLVVIA 163
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 410 NSIRVYFKFVQEGWLIKLI 354
N IR YF V++GW +KLI
Sbjct: 583 NEIRSYFPQVRDGWDLKLI 601
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 255 DQTQGTIPANNNQYYNPNFFTPAPIPGEAT 344
D++Q T N YNP TP PIP AT
Sbjct: 504 DESQNT----ENVDYNPQTHTPVPIPTTAT 529
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = -2
Query: 232 WEKFENLKSGQLFQKYLMNQKNNSDCRFAFAMHIHW 125
W + L + +LF+KY +K + F HW
Sbjct: 291 WNTYGELDNSELFRKYGFTKKKGTPHDFVLIKKEHW 326
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 26.6 bits (56), Expect = 3.6
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 439 LSMDNPKPMM--QIFYLGILTLLVPCILPSLGSLPFSIRQ*SPFWVCVWTVNDVCYIDVF 612
L N K ++ IF L L L CI + S S +VC+ T +C I +
Sbjct: 996 LEKSNTKNVLVTSIFLLSSLQYLGICIGINQSSEFLSPIWKKKTYVCLCTTIGLCNIYLC 1055
Query: 613 FTFTNESYRRCFTILSVASVLGYCMLPMVVLA 708
F N RC I + ++ + +L M V++
Sbjct: 1056 FANENHIISRCLQITRLPTLYRFIILFMGVIS 1087
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 508 MGPAMSVSLSKKFASSALDCPWKGLRTANVFSRI 407
+ P+ L K ++++ D PWK T N+ S++
Sbjct: 206 INPSSITGLGKDWSTAFEDIPWKNPNTENLTSQV 239
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = -3
Query: 552 LPDRKRQTA--KARQNAWDQQCQYP*VKNLHHRLWIVHGKD*EPLMFSPEFYQGIFQVRP 379
+PD++ + WD+ ++ +N + W++ GK+ E F +G FQ
Sbjct: 1851 IPDKRNNPVPISPSSDTWDRDVEFYPSQNGYDPRWLIAGKEDEDSFLYGLFDKGSFQETL 1910
Query: 378 RGVA 367
G A
Sbjct: 1911 NGWA 1914
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 192 WNNCPDFRFSNFSHGSTELF 251
W+N PD+ F F H LF
Sbjct: 1137 WSNPPDYDFDRFPHALLALF 1156
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 608 TSI*QTSLTVHTQTQNGLYCLIEKGK 531
T + +++ +VH QNGLYC I+K K
Sbjct: 170 TRLCRSASSVHISYQNGLYC-IDKDK 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,267
Number of Sequences: 5004
Number of extensions: 62031
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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