Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40599
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 138 1e-33
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 138 1e-33
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 100 2e-22
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 58 1e-09
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 31 0.18
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 30 0.31
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 30 0.31
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 27 3.9
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 27 3.9
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 3.9
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 5.1
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 5.1
SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 5.1
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ... 26 6.8
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 6.8
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 6.8
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 26 6.8
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 138 bits (333), Expect = 1e-33
Identities = 81/164 (49%), Positives = 98/164 (59%), Gaps = 3/164 (1%)
Frame = +3
Query: 255 KEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLC 434
KEG M EENLR RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L
Sbjct: 672 KEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLV 731
Query: 435 EIQCPEVAVGGIYGVLNRRRGHVF-ESPRWQVHLCSL*RPTYLSMSRSVLL--PICVPTP 605
EIQ E A+GGIY VLN++RGHVF E R L ++ YL ++ S + T
Sbjct: 732 EIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNI--KAYLPVNESFGFTGELRQATA 789
Query: 606 ADRPSRSAYSTIGRSSLENPFEPQSKPYNVVQETRKRKGLKEGL 737
+ + S +P +P SKP +V E RKRKGLKE +
Sbjct: 790 GQAFPQLVFDHWSPMS-GDPLDPTSKPGQIVCEARKRKGLKENV 832
Score = 120 bits (290), Expect = 2e-28
Identities = 52/87 (59%), Positives = 68/87 (78%)
Frame = +1
Query: 1 FMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNIL 180
FM A+PM + L I+ G VNPRDDFK RAR + +++ +DVT+ARKIWCFGP+ TG N++
Sbjct: 587 FMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGPDTTGANVV 646
Query: 181 VDCSKGVQYLNEIKDSVVAGFQWAARK 261
VD +K V YLNEIKDSVVA F WA+++
Sbjct: 647 VDQTKAVAYLNEIKDSVVAAFAWASKE 673
Score = 94.3 bits (224), Expect = 2e-20
Identities = 42/86 (48%), Positives = 55/86 (63%)
Frame = +2
Query: 503 FRESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGEPVRTSEQ 682
F E Q GTP++ +KAYLPVNESFGFT +LR T GQAFPQ VFDHW + G+P+ + +
Sbjct: 755 FSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSK 814
Query: 683 ALQRCTGNEKEERIEGRSPDLTQYLD 760
Q K + ++ PD T+Y D
Sbjct: 815 PGQIVCEARKRKGLKENVPDYTEYYD 840
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 138 bits (333), Expect = 1e-33
Identities = 81/164 (49%), Positives = 98/164 (59%), Gaps = 3/164 (1%)
Frame = +3
Query: 255 KEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLC 434
KEG M EENLR RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L
Sbjct: 672 KEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLV 731
Query: 435 EIQCPEVAVGGIYGVLNRRRGHVF-ESPRWQVHLCSL*RPTYLSMSRSVLL--PICVPTP 605
EIQ E A+GGIY VLN++RGHVF E R L ++ YL ++ S + T
Sbjct: 732 EIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNI--KAYLPVNESFGFTGELRQATA 789
Query: 606 ADRPSRSAYSTIGRSSLENPFEPQSKPYNVVQETRKRKGLKEGL 737
+ + S +P +P SKP +V E RKRKGLKE +
Sbjct: 790 GQAFPQLVFDHWSPMS-GDPLDPTSKPGQIVCEARKRKGLKENV 832
Score = 120 bits (290), Expect = 2e-28
Identities = 52/87 (59%), Positives = 68/87 (78%)
Frame = +1
Query: 1 FMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNIL 180
FM A+PM + L I+ G VNPRDDFK RAR + +++ +DVT+ARKIWCFGP+ TG N++
Sbjct: 587 FMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGPDTTGANVV 646
Query: 181 VDCSKGVQYLNEIKDSVVAGFQWAARK 261
VD +K V YLNEIKDSVVA F WA+++
Sbjct: 647 VDQTKAVAYLNEIKDSVVAAFAWASKE 673
Score = 94.3 bits (224), Expect = 2e-20
Identities = 42/86 (48%), Positives = 55/86 (63%)
Frame = +2
Query: 503 FRESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGEPVRTSEQ 682
F E Q GTP++ +KAYLPVNESFGFT +LR T GQAFPQ VFDHW + G+P+ + +
Sbjct: 755 FSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSK 814
Query: 683 ALQRCTGNEKEERIEGRSPDLTQYLD 760
Q K + ++ PD T+Y D
Sbjct: 815 PGQIVCEARKRKGLKENVPDYTEYYD 840
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 100 bits (240), Expect = 2e-22
Identities = 47/91 (51%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 GRKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVY 428
G +EG + +E +R V F + DV L + I+RGGGQIIPT RR Y+ LTA PRLMEPVY
Sbjct: 786 GTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVY 845
Query: 429 LCEIQCPEVAVGGIYGVLNRRRGHVFES-PR 518
+ E+ P ++ IY +L RRRGHV + PR
Sbjct: 846 MVEVHAPADSLPIIYDLLTRRRGHVLQDIPR 876
Score = 67.3 bits (157), Expect = 2e-12
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = +2
Query: 524 GTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGEPVRTS 676
G+P+++V+A +PV +S GF DLR +T GQA Q VFDHWQV+PG+P+ S
Sbjct: 878 GSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKS 928
Score = 64.9 bits (151), Expect = 1e-11
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Frame = +1
Query: 4 MKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILV 183
M +P+ G+ DI+ G+VN K + + + Y++D+ +R IW FGP+ G NIL
Sbjct: 700 MVVEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIWAFGPDDRGTNILR 759
Query: 184 DCSKGV----QYLNEIKDSVVAGFQWAARK 261
D + LN +K+ + GFQW R+
Sbjct: 760 DDTLSTDVDKNVLNSVKEYIKQGFQWGTRE 789
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 58.0 bits (134), Expect = 1e-09
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +2
Query: 509 ESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGEP--VRTSEQ 682
E GTP FIVKA +PV ESFGF ++ T G A+PQ +F +++L P V T+E+
Sbjct: 895 EEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENPFWVPTTEE 954
Query: 683 ALQ 691
L+
Sbjct: 955 ELE 957
Score = 45.2 bits (102), Expect = 1e-05
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +3
Query: 348 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFE 509
GQ+I + + L PRLM +Y C++Q +G +YGV+++RRG V +
Sbjct: 841 GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVID 894
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +1
Query: 70 DDFKTRARYLTEKYEYDVTEARK----IWCFGPEGTGPNILVDCSK 195
+ F R L E+ D+ E + I FGP+ GPNIL D +K
Sbjct: 724 EKFYERLSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTK 769
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 31.1 bits (67), Expect = 0.18
Identities = 20/86 (23%), Positives = 36/86 (41%)
Frame = +3
Query: 255 KEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLC 434
K+G + ++ RF + D H ++ T L A P ++EP+
Sbjct: 624 KKGFLIGHPIKNCRFVLEDGAYHPVDSSELAFRL--ATISAFRTAFLQANPMVLEPIMNV 681
Query: 435 EIQCPEVAVGGIYGVLNRRRGHVFES 512
I P GG+ G L++R+ + +S
Sbjct: 682 SITAPVEHQGGVIGNLDKRKATIVDS 707
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +2
Query: 536 FIVKAYLPVNESFGFTADLRSNTGGQ 613
F ++A +P+N F +++D+R+ T G+
Sbjct: 714 FTLQAEVPLNSMFSYSSDIRALTKGK 739
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 30.3 bits (65), Expect = 0.31
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 705 FPVQRCRACSEVRTGSPGRTCQWSNTHCGKACPPVLERKSAVKPNDS 565
+ + RC C E + G C + C K C P + K K +DS
Sbjct: 414 YQIMRCALCGEFLKNAAGMQCIDCHYTCHKKCYPKVVTKCISKSSDS 460
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 30.3 bits (65), Expect = 0.31
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 705 FPVQRCRACSEVRTGSPGRTCQWSNTHCGKAC 610
+ + RC C+E+ + SPG C+ + C K C
Sbjct: 422 YQIMRCAVCAELFSYSPGLQCENCSFVCHKKC 453
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 422 RLHETGL-SS*QTCVQASSSCWNDLATTSMDGISMECYIIDVESNTTQI 279
++ ET L ++ Q + CW++L+TTS + + II + TT I
Sbjct: 191 QIQETSLGATTQEDESSDGICWDELSTTSPESSKVSEPIIQDNTQTTHI 239
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 43 IDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNIL 180
++E + R+ + Y + + VT ++ + FGP GTG +L
Sbjct: 502 LEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 159 LGAKAPNLTGFGNIVFVLFCKIPSAS 82
+G PNL GN +F L ++PS+S
Sbjct: 169 IGILPPNLNSIGNKMFSLKSRVPSSS 194
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 31 LPEDIDEGRVNPRDDFKT 84
LPE IDEG+++ DD KT
Sbjct: 194 LPEKIDEGKLSDVDDGKT 211
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 579 LLPICVPTPADRPSRSAYSTIGRSSLENP 665
+LP+ + TPA P + YS G +S+ NP
Sbjct: 109 VLPLSINTPAQWPEKEVYSLQG-TSIFNP 136
>SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 128
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 615 PSRSAYSTIGRSSLENPFEPQSKPYNVVQETRKRKG 722
P R+ I SL P P +P+NV Q +KR G
Sbjct: 74 PFRTLNHAINAESL--PSLPDQEPWNVFQNAKKRDG 107
>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
Atp23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 185
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 693 RCRACSEVRTGSPGRTCQWS 634
R +ACSE+R S C+W+
Sbjct: 105 RHQACSEIRASSMSGECRWT 124
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 127 EARKIWCFGPEGTGPNILVD--CSKGVQYLNE 216
E + GP G+G ++LVD S+ Q +NE
Sbjct: 574 EGNSVIIVGPRGSGKSVLVDDILSRAAQEINE 605
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 305 DVESNTTQILFSHNSFLAAHWNPATTESLI 216
D+ + TT+ L + SF+ A P+T ES++
Sbjct: 18 DIATQTTRSLTNELSFIVAGLRPSTKESVL 47
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 582 LPICVPTPADRPSRSAYSTIGRSSLENPFEPQSKPY 689
+PI V AD + TI SS++ PF+P + Y
Sbjct: 95 VPIRVYNDADTMDPFSLDTIPDSSMDMPFDPLASDY 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,530,715
Number of Sequences: 5004
Number of extensions: 81151
Number of successful extensions: 238
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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