Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40598
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 132 5e-32
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 74 2e-14
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 73 3e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 64 1e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 52 8e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 52 8e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 50 3e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 50 3e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 50 4e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 50 4e-07
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 49 5e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 49 5e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 43 5e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 41 2e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 37 0.002
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 37 0.003
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 36 0.007
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 35 0.010
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 33 0.038
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 31 0.16
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.27
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.27
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 29 0.63
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 29 0.63
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 3.3
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.4
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.4
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 5.8
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 7.7
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.7
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 132 bits (319), Expect = 5e-32
Identities = 61/110 (55%), Positives = 79/110 (71%), Gaps = 1/110 (0%)
Frame = +2
Query: 248 FQQNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 427
FQ++FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + VK +G
Sbjct: 82 FQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLG 141
Query: 428 YKEPTPIQAQGWPIAMSGKNLVGV-PNGSGKTLAYILPAIVHINNQPPIS 574
++ PTPIQ Q WP+AMSG+++VG+ GSGKTL+Y LPAIVHIN QP +S
Sbjct: 142 FEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLS 191
Score = 51.2 bits (117), Expect = 1e-07
Identities = 25/39 (64%), Positives = 27/39 (69%)
Frame = +3
Query: 567 LFRRSDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 683
L DGPI LVLAPTRELA QIQQ FG +S +RNT
Sbjct: 189 LLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNT 227
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 73.7 bits (173), Expect = 2e-14
Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Frame = +2
Query: 248 FQQNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTM 424
F+++FY + SP EV+E R + + + G++ P+ + + + ++
Sbjct: 377 FKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSL 436
Query: 425 GYKEPTPIQAQGWPIAMSGKNLVGV-PNGSGKTLAYILPAIVHINNQPPI 571
GY++PT IQAQ P SG++++GV GSGKT+A++LP HI +Q P+
Sbjct: 437 GYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPL 486
Score = 32.3 bits (70), Expect = 0.067
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 564 RLFRRSDGPIALVLAPTRELAQQI 635
R + +GPIA+++ PTRELA QI
Sbjct: 484 RPLKTGEGPIAIIMTPTRELAVQI 507
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 73.3 bits (172), Expect = 3e-14
Identities = 31/88 (35%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = +2
Query: 317 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 496
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 497 V-PNGSGKTLAYILPAIVHINNQPPISE 577
+ GSGKT A+I+P I+ I+ PP++E
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTE 319
Score = 35.5 bits (78), Expect = 0.007
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 585 GPIALVLAPTRELAQQIQ 638
GP A+VLAPTRELAQQIQ
Sbjct: 325 GPYAVVLAPTRELAQQIQ 342
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 64.5 bits (150), Expect = 1e-11
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Frame = +2
Query: 308 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 478
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 479 GKNLVGV-PNGSGKTLAYILPAIVHIN 556
G+++VG+ GSGKT+A+ +PA+ ++N
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLN 228
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 52.0 bits (119), Expect = 8e-08
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 374 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV-PNGSGKTLAYILPAIVH 550
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+ GSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 551 INNQP 565
+ N P
Sbjct: 108 LWNNP 112
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 594 ALVLAPTRELAQQIQQVAADFGHTSYVRN 680
A+VLAPTRELA QI + G + VR+
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRS 145
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 52.0 bits (119), Expect = 8e-08
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 332 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPNG 508
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ G
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 509 SGKTLAYILPAI 544
SGKT ++ P +
Sbjct: 217 SGKTAGFLFPIL 228
Score = 32.7 bits (71), Expect = 0.051
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 588 PIALVLAPTRELAQQIQQVAADFGHTSYVR 677
P L+LAPTREL QI + + F + S+VR
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVR 285
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 50.0 bits (114), Expect = 3e-07
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +2
Query: 344 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPNGSGKT 520
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV GSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 521 LAYILPAIVHINNQPPISE 577
AY++P + + Q I E
Sbjct: 66 AAYLIPILELLLKQKQIDE 84
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 585 GPIALVLAPTRELAQQIQQV 644
G AL+L PTRELAQQ+ V
Sbjct: 88 GIFALLLVPTRELAQQVYNV 107
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 50.0 bits (114), Expect = 3e-07
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +2
Query: 374 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL-VGVPNGSGKTLAYILP 538
F+ N +++ V G+K+ TP+QA P+ + K+L V GSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP 58
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 594 ALVLAPTRELAQQIQQVAAD 653
AL++APTRELA QI V +
Sbjct: 75 ALIVAPTRELATQIFNVTKE 94
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 49.6 bits (113), Expect = 4e-07
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 374 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-NGSGKTLAYILPAIVH 550
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG GSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 551 INNQP 565
+ +P
Sbjct: 321 LLYRP 325
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 597 LVLAPTRELAQQIQQVA 647
L+L PTRELA Q VA
Sbjct: 334 LILCPTRELAMQCHSVA 350
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 49.6 bits (113), Expect = 4e-07
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +2
Query: 302 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 481
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 482 KNLVGVPN-GSGKTLAYILPAI 544
++++G GSGKTLA+++P I
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI 148
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 570 FRRSDGPIALVLAPTRELAQQIQQVAAD 653
F+ +G ++++PTRELA QI VA +
Sbjct: 156 FKPRNGTGVIIISPTRELALQIFGVAKE 183
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 49.2 bits (112), Expect = 5e-07
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +2
Query: 374 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPNGSGKTLAYILPAIVH 550
FE+ + G+ G++ P+PIQ + PIA+SG++++ NG+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 551 INNQ 562
++ +
Sbjct: 106 VDTK 109
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 597 LVLAPTRELAQQIQQVAADFG 659
L+L PTRELA Q QV G
Sbjct: 116 LILVPTRELALQTSQVCKTLG 136
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 49.2 bits (112), Expect = 5e-07
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +2
Query: 374 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-NGSGKTLAYILPAIVH 550
F+ + + + G+K PTPIQ + P+ + G+++VG+ GSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 551 INN 559
+ +
Sbjct: 131 LKS 133
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 594 ALVLAPTRELAQQIQQVAADFGHTSYVRN 680
AL+L+P RELA Q +V DF + +R+
Sbjct: 142 ALILSPNRELALQTVKVVKDFSKGTDLRS 170
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 42.7 bits (96), Expect = 5e-05
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Frame = +2
Query: 308 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 487
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 488 LVGVPN-GSGKTLAYILPAIVHINNQPPISEK*WSDCFGLGA 610
++G GSGKTLA+I+P I + + K W+ GLGA
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIEN------LYRKKWTSLDGLGA 114
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 540 PLCT*ITNRLFRRSDGPIALVLAPTRELAQQIQQVAADFG 659
PL + + + DG ALV++PTRELA Q + G
Sbjct: 96 PLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIG 135
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.7 bits (91), Expect = 2e-04
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Frame = +2
Query: 269 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ-QGVKTMGYKEPTP 445
P P++ ++ +++ K + V+G +NP+ EE FP+ + + +K E T
Sbjct: 18 PQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEGILCENLKKQNITECTT 71
Query: 446 IQAQGWPIAMSGKNLVG-VPNGSGKTLAYILPAIVHINNQPP 568
IQ P S ++L+ P GSGKT+AY+ P + + P
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP 113
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 594 ALVLAPTRELAQQIQQVA 647
A+++APTREL +QI + A
Sbjct: 118 AIIVAPTRELCEQIYRQA 135
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +2
Query: 425 GYKEPTPIQAQGWPIAMSGKNLVG-VPNGSGKTLAYILPAIVH 550
G+ +P PIQ+ P A G +++G GSGKTLA+ +P + H
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEH 183
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3
Query: 594 ALVLAPTRELAQQIQQ 641
ALV+APTRELA QI Q
Sbjct: 195 ALVVAPTRELAHQICQ 210
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +2
Query: 308 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 487
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 488 LVG-VPNGSGKTLAYILPAIVHIN 556
++ +G+GKT + + + I+
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSID 84
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 594 ALVLAPTRELAQQIQQVAADFG 659
AL+L+PTRELA QIQ V G
Sbjct: 92 ALILSPTRELAVQIQNVVLALG 113
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 35.5 bits (78), Expect = 0.007
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 374 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV-GVPNGSGKTLAYILPAIVH 550
F + ++ +K + EPT IQ + G+N + G GSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 551 INNQP 565
+ P
Sbjct: 69 WSKDP 73
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 585 GPIALVLAPTRELAQQIQQVAADFG 659
G AL+L PTRELA QI + A G
Sbjct: 75 GIFALILTPTRELAIQIDEQFAALG 99
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 594 ALVLAPTRELAQQIQQVAADFG 659
AL+LAPTRELAQQIQ+V G
Sbjct: 90 ALILAPTRELAQQIQKVVVALG 111
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 33.1 bits (72), Expect = 0.038
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 555 ITNRLFRRSDGPIALVLAPTRELAQQIQQVA 647
+ L R+ G A+++APTREL QQI VA
Sbjct: 206 LPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236
Score = 30.3 bits (65), Expect = 0.27
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +2
Query: 422 MGYKEPTPIQAQGWPIAMSGKN---LVGVPNGSGKTLAYILPAIVHINNQP 565
M PT IQ+ P ++ + + GSGKTLAY+LP + + P
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLP 207
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 31.1 bits (67), Expect = 0.16
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 588 PIALVLAPTRELAQQIQQVAADFGHTSYVR 677
P A+ LAP+RELA+QI V + G + V+
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 485 NLVGV-PNGSGKTLAYILPAIVHINNQPP 568
NL+ V P G GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 485 NLVGV-PNGSGKTLAYILPAIVHINNQPP 568
NL+ V P G GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.63
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +2
Query: 341 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN--LVGVPNGSG 514
S ++ P + E A+ + + G+++ TP+Q + + +V G+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 515 KTLAYILPAIVHINNQPP 568
KTLA++L A + P
Sbjct: 89 KTLAFLLVAFKDVLKGKP 106
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 29.1 bits (62), Expect = 0.63
Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = +2
Query: 473 MSGKNL-VGVPNGSGKTLAYILPAIV 547
+SGK++ + +P G GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 479 GKNLVGVPNGSGKTLAYILPAI 544
G V GSGKTL+Y++P +
Sbjct: 174 GDVCVSAATGSGKTLSYVIPIV 195
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 436 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 311
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 296 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 427
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 296 PYEVEEYRNKHEVTVS 343
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 491 VGVPNGSGKTLAYILPAIVHINNQP 565
VG P GSGKT+A L ++N P
Sbjct: 1155 VGAPTGSGKTMAAELATWRALHNYP 1179
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 491 VGVPNGSGKTLAYILPAIVH 550
+G PNGSGKT+ L + H
Sbjct: 1385 IGAPNGSGKTVCAELALLHH 1404
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 425 PLSLHLVAHNQENL--LLQSIE 366
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,455
Number of Sequences: 5004
Number of extensions: 60098
Number of successful extensions: 226
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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