Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40598
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       66   4e-13
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 65.7 bits (153), Expect = 4e-13
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +2

Query: 329 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPN 505
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+     
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQT 242

Query: 506 GSGKTLAYILPAI 544
           GSGKT A+ +P I
Sbjct: 243 GSGKTAAFAVPII 255



 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 588 PIALVLAPTRELAQQIQQVAADFGHTSYVR 677
           P  ++++PTREL  QI Q    F   S ++
Sbjct: 274 PQVVIVSPTRELTIQIWQQIVKFSLNSILK 303


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 227 PIWASHVLPSREFFFP 180
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 292 SFENCRMWIIKVLLKGWSETE 230
           +F +    II   LKGW E E
Sbjct: 24  AFAHSNQLIIDKSLKGWKEVE 44


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 227 PIWASHVLPSREFFFP 180
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 287 KRSPYEVEEYRNKHEVTV 340
           K  P++V+++R+K  VT+
Sbjct: 64  KNYPFDVDQWRDKTFVTI 81


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -3

Query: 135 TETNYRRICCLLQIWNHRFHGYYSN 61
           T  N RR    ++ W H F   Y N
Sbjct: 416 TVENNRRNPWFVEFWEHHFQCRYPN 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,245
Number of Sequences: 438
Number of extensions: 4244
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)