Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40597
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   3.0  
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    26   5.3  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         26   7.0  
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   7.0  

>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 247 KKSLDISEFMGPYTKNTCFFFLSLFKEIIH--LVNMSHHCA 131
           ++ LD++EF+ P+ + +  F   LF  I+H   +N  H+ A
Sbjct: 775 EQELDLNEFVMPHLRASSSFRYRLFGVIVHSGTLNYGHYVA 815


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 231 ISNDFLIKSTFKSGHCP 281
           +SN+ LIK T KSG CP
Sbjct: 106 LSNENLIKLTQKSGECP 122


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 586 WRRMSWRRVATLYDG 542
           W R++WR+VA   DG
Sbjct: 646 WHRLAWRKVAVRLDG 660


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 180 DKKKKQVFLV*GPINS-DISNDFLIKSTFKSGHCPIWT 290
           +K+ K++  + G  N   + N  L   TF++G+ P+WT
Sbjct: 120 NKRAKRLKKITGAKNFWQVGNSSLPARTFENGNIPVWT 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,827
Number of Sequences: 5004
Number of extensions: 54172
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)