Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40596
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 119 1e-27
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 117 6e-27
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 116 1e-26
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 39 0.003
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736... 30 1.2
06_01_0138 - 1051408-1051625,1052790-1052889,1053724-1054085,105... 30 1.2
09_03_0201 - 13466189-13466422,13466508-13467280,13467490-134676... 28 3.5
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 28 4.7
09_04_0520 + 18286435-18287279,18287818-18288697 27 6.2
09_04_0006 - 13632902-13633026,13634013-13634179,13634286-136344... 27 6.2
08_02_1092 + 24267737-24268641,24269005-24269884 27 6.2
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 27 6.2
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 27 8.2
11_04_0258 + 15489733-15490054,15490150-15490339,15490438-154909... 27 8.2
05_03_0048 + 7796372-7796674,7796969-7797169 27 8.2
02_03_0016 + 13962086-13962326,13962529-13962614,13962652-139627... 27 8.2
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 27 8.2
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 119 bits (287), Expect = 1e-27
Identities = 58/76 (76%), Positives = 64/76 (84%)
Frame = +2
Query: 26 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 205
M+ RK + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 206 KVKADRDEASPYAAML 253
KVKADRDE+SPYAAML
Sbjct: 60 KVKADRDESSPYAAML 75
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/54 (48%), Positives = 30/54 (55%)
Frame = +1
Query: 250 VGAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI 411
+ +QDVA++CK LGITALHIKLRA AQ MKIGRI
Sbjct: 75 LASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +1
Query: 412 EDVTPVPSDSTRRR 453
EDVTPVP+DSTRR+
Sbjct: 178 EDVTPVPTDSTRRK 191
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 117 bits (281), Expect = 6e-27
Identities = 56/76 (73%), Positives = 62/76 (81%)
Frame = +2
Query: 26 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 205
M+ RK +E VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60
Query: 206 KVKADRDEASPYAAML 253
KVKADRDE+SPYAAML
Sbjct: 61 KVKADRDESSPYAAML 76
Score = 62.9 bits (146), Expect = 1e-10
Identities = 38/79 (48%), Positives = 44/79 (55%), Gaps = 11/79 (13%)
Frame = +1
Query: 250 VGAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI------ 411
+ +QDVA++CK LGITALHIKLRA AQ MKIGRI
Sbjct: 76 LASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIADDVLS 135
Query: 412 -----EDVTPVPSDSTRRR 453
EDVTPVP+DSTRR+
Sbjct: 136 IFCHTEDVTPVPTDSTRRK 154
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 116 bits (279), Expect = 1e-26
Identities = 56/73 (76%), Positives = 62/73 (84%)
Frame = +2
Query: 35 RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 214
+K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 27 KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 85
Query: 215 ADRDEASPYAAML 253
ADRDE+SPYAAML
Sbjct: 86 ADRDESSPYAAML 98
Score = 75.4 bits (177), Expect = 2e-14
Identities = 38/68 (55%), Positives = 44/68 (64%)
Frame = +1
Query: 250 VGAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPV 429
+ +QDVA++CK LGITALHIKLRA AQ MKIGRIEDVTPV
Sbjct: 98 LASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPV 157
Query: 430 PSDSTRRR 453
P+DSTRR+
Sbjct: 158 PTDSTRRK 165
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2
Query: 191 VTGGMKVKADRDEASPYAAML 253
V GGMK+KAD DE+SPYAAML
Sbjct: 211 VGGGMKIKADCDESSPYAAML 231
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 191 VTGGMKVKADRDEASPYAAMLG 256
V GGM +K+D DE SP+ + +G
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVG 187
>08_02_0250 +
14772746-14773037,14773141-14773203,14773458-14773621,
14774126-14774220,14774517-14774728,14774972-14775009,
14775131-14775424,14775510-14775617
Length = 421
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 297 GLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDWP 407
G H PC+ W + W WC SG C + WP
Sbjct: 345 GKPHGWPCWGW-DGAEMWLWCQSKNSGHC---HIGWP 377
>06_01_0138 -
1051408-1051625,1052790-1052889,1053724-1054085,
1055055-1055079
Length = 234
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 300 GRYAKSFAFLCYILCPNIAA*GDASSRSAFTFMPPVTRAI 181
G Y L YILCP +A A+S SAF +P + +
Sbjct: 159 GGYPGKVGNLLYILCPAFSAVPSAASFSAFRIVPAMATTV 198
>09_03_0201 -
13466189-13466422,13466508-13467280,13467490-13467637,
13468176-13468313
Length = 430
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 310 LCARPLCQEFCISLLHPVPQHSSV 239
LC R LC+EFC+ + P+ + V
Sbjct: 51 LCTRDLCEEFCLLRISPLAREWGV 74
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +2
Query: 80 PQHLVGETVFGVAHIFASFNDTF----VHVTDLSGRETIARVTGGMKV 211
P HL G F +A F ++N+T ++ D R T+A TGG V
Sbjct: 481 PMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAV 528
>09_04_0520 + 18286435-18287279,18287818-18288697
Length = 574
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 120 CATPNTVSPTKCWGPR 73
C P+ V+PT C+GPR
Sbjct: 364 CIQPSCVAPTTCFGPR 379
>09_04_0006 -
13632902-13633026,13634013-13634179,13634286-13634437,
13634564-13634672,13635096-13635280,13635372-13635687,
13635796-13635903,13635994-13636139,13636223-13636237
Length = 440
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 282 NSWHNGLAHKAPCYWWKQNKDPWSWC 359
+ W GL +P Y + N D + WC
Sbjct: 305 DGWQEGLITFSPTYKYHPNSDQYYWC 330
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 120 CATPNTVSPTKCWGPR 73
C P+ V+PT C+GPR
Sbjct: 384 CIQPSCVAPTTCFGPR 399
>07_03_0562 + 19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -1
Query: 237 GDASSRSAFTFMPPVTRAIVSRPDKSVT*TNVSLNEAKMCATPNTVSPT 91
G SSR+ F+ PP R S P V + +S A + P VSPT
Sbjct: 860 GPDSSRNIFSAFPPAVRENQSIPSAPVAQSWISFG-ASSESKPTIVSPT 907
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 116 AHIFASFNDTFVHVTDLSGRETIARVT 196
+H+++ D V++TDLS RE++ T
Sbjct: 280 SHVYSGGRDQSVYLTDLSNRESVLLCT 306
>11_04_0258 +
15489733-15490054,15490150-15490339,15490438-15490910,
15501203-15501513
Length = 431
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 319 HGALCARPLCQEFCISLLHPVPQHSSVG 236
HG L R LC+EFC+ + P+ Q +G
Sbjct: 61 HG-LSTRDLCKEFCMLQIAPLAQDWRIG 87
>05_03_0048 + 7796372-7796674,7796969-7797169
Length = 167
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 416 MSPPYHQTRPVEGWPKRTQAVIC 484
MSPP+H T W R +AV+C
Sbjct: 11 MSPPHH-TNVAPSWRARARAVLC 32
>02_03_0016 +
13962086-13962326,13962529-13962614,13962652-13962750,
13963022-13963131,13964024-13964083,13964220-13964304
Length = 226
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 399 DWPH*RCHPRTIRLDP 446
D PH RC+ R +RLDP
Sbjct: 10 DLPHVRCYTRHLRLDP 25
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 144 HSFMLLIYPAGKLSPVSLVA*R*RLTVMKRHPT 242
H+F + A +L P L A +LT++++HP+
Sbjct: 1691 HAFCQFVTGAPRLPPGGLAALNPKLTIVRKHPS 1723
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,264,785
Number of Sequences: 37544
Number of extensions: 299650
Number of successful extensions: 760
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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